Sphingopyxis sp. J-6: V6U71_15960
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Entry
V6U71_15960 CDS
T10764
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
spjj Sphingopyxis sp. J-6
Pathway
spjj03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
spjj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
V6U71_15960 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
spjj03400
]
V6U71_15960 (mfd)
Enzymes [BR:
spjj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
V6U71_15960 (mfd)
DNA repair and recombination proteins [BR:
spjj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
V6U71_15960 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
DEAD
TRCF
CarD_TRCF_RID
Helicase_C
MFD_D3
Cas3-like_C_2
UB2H
RecG_dom3_C
SecA_DEAD
Motif
Other DBs
NCBI-ProteinID:
XMG39331
LinkDB
All DBs
Position
3335400..3338894
Genome browser
AA seq
1164 aa
AA seq
DB search
MTRSAADIFAAIAPASAPLTLARAADGFLPLLLADLARASDKRLVYVATDDAAMQAVADA
APFFAPDLLVHRFPAWDCLPYDRAGPSMRVSADRLATLSALQAPPKRGELILTTVAAITQ
RTLTPFRIRQLATTLAPGQRIDRDALAELLVANGFSRVDTVADQGEFAVRGGILDLFPAG
EETGLRVDFFGDEIESIRRFDPADQRSLGPAKALQLLPAAETLLDQDTIKRFRSLYRELF
GAQATGDPLYQAVSEGRRQAGMDHWLPLFEERLATLFDHIDGATPVLRGHRTEATAETRF
AAIADYHANRVAAERESPGSYRPLAPETLYLTEAEWASAAAQRPIHVVTPFDVPPAATVV
DLETFAARDFTPERTADLNVYDKVADHLSDERRKGRKTIIASYSGGARERLSGLLRDHGV
TSLAPAESWQDALGTASSESGGATAMVVLPLDHGFASDAISLLTEQDILGERLVRRQKRR
KSADAFLAELATLSVGDLVVHLDHGIGRYEGLTQIPVGNSPHDCVALTYAGGDKLYVPVE
NLDVLSRYGGESEGVGLDKLGGEAWQRRKARMKERIREIAGELLATAAQRALRSGEVLAQ
DTAYPAFADRFPYQETDDQDRAIGDVLEDMASGRPMDRLVCGDVGFGKTEVALRAAFVAA
MAGVQVAVVVPTTLLARQHFTNFVERFKGFPVNIGRLSRLVPAAEAARTRDGLASGQIDI
VVGTHAVIAKSVEFKNLGLVIVDEEQRFGVVHKERLKQLKTDVHVLTLTATPIPRTLQMA
MSGLRELSVIQTPPVDRLAVRTYVAPWDPVVIREALLREHDRGGQSFFVTPRIKDLPDIE
EFLRTRVPEIKYVVAHGQMAPGEVEERMSAFYDRKYDVLVSTTIVESGLDIPSANTLIVH
RADRFGLAQLYQLRGRVGRSKTRAYAYLTTLEGGAITDTAEKRLKLLGDLDTLGAGFQLA
SHDLDIRGAGNLVGDEQSGHIREVGFELYQSMLEEAILVAKAEGMGAAPPREALSPVITV
DAPILIPEDYVPDLPLRMALYRRLNEAGDRPALDAFAAEMIDRFGPLPPETANLIQLMEI
KANAKLAGIAKLDVGTKGALVSFHGDQFANVPGLIAYVERLKGRARIRPDNKLSVSGDWM
STGARLNGALQLSKGLGKLARQAG
NT seq
3495 nt
NT seq
+upstream
nt +downstream
nt
atgacccgaagcgccgccgacattttcgccgccatcgcgccggcatcggccccgctgacg
ctcgcgcgcgccgccgacggtttcctgccgctgctgctcgccgacctcgcgcgcgccagc
gacaagcgtctcgtctatgtcgcgaccgacgatgccgcgatgcaggcggtcgccgatgcc
gcccccttctttgcgcccgacctgctcgtccaccgctttcccgcatgggattgcctgccc
tatgatcgcgccggcccgtcgatgcgcgtcagcgccgaccgcctcgcgacactgtcggcg
ctgcaggcaccgccgaagcgcggcgagttgatcctgaccaccgtcgccgcgattacccag
cgtacccttaccccctttcgcatccgccagctcgcgacgacgctggcgcccggacagcgg
atcgaccgcgacgcgcttgccgaactgctcgtcgcgaacgggttcagccgcgtcgacacc
gtcgctgatcagggcgagttcgcggtgcgcggcggcatcctcgacctcttccccgcgggc
gaggagaccggcctgcgcgtcgattttttcggcgacgagatcgaaagcatccgccgtttc
gaccccgccgaccagcgcagcctcggtcctgccaaggcgctgcaattgctgcccgccgca
gagaccctgctcgatcaggacacgatcaagcgcttccgttcgttgtaccgcgaactgttc
ggcgcgcaggcgaccggcgacccgctctatcaggcggtcagcgaggggcggcgccaggcc
ggcatggaccattggctgccgctgttcgaggagcggttggcgaccctgttcgaccatatc
gacggcgccacgccggtgctgcgcggccaccgcaccgaggcgaccgccgaaacgcgcttt
gccgcgatcgccgactatcatgcgaaccgtgtcgccgccgaacgcgaatcacccggcagc
tatcgcccgctggcgcccgagacgctctacctgaccgaagccgaatgggcatcggcggca
gcgcaacgcccgatccatgtcgtcacacccttcgatgtcccaccggcggcaacggtcgtc
gacctcgaaaccttcgccgcgcgcgatttcacccccgaacgcaccgctgacctcaacgtc
tatgacaaggtcgccgaccatctgtcagacgaacgccgcaaggggcgcaagacgatcatc
gccagctattcgggcggcgcgcgcgagcgcctgtcggggctgctccgcgatcacggcgtc
acgtcgctcgcccccgccgagagctggcaggacgcgctcggcaccgcctcgtccgaaagc
ggcggcgcgactgcgatggtcgtcctgccactcgaccatggtttcgccagcgacgcgatt
agcctgctcaccgaacaggatattctcggcgagcgtctggtgcgccgccagaagcgccgc
aagagcgccgacgccttcctcgccgaactcgcgacgctcagcgtcggcgacctcgtcgtc
cacctcgaccatggcatcggccgttatgaggggctgacccagattccggtcggcaacagc
ccgcacgactgcgtcgcgctcacttacgccggcggcgataagctttacgttccggtcgaa
aatctcgacgtcctctcgcgctacggtggcgagagcgagggggtcggcctcgacaagctc
ggcggcgaagcctggcagcgccgtaaggcacggatgaaggagcgtatccgcgagatcgcg
ggcgagttgctcgcgaccgcggcgcagcgtgcgctgcgctcgggcgaggtgctcgcacag
gataccgcctaccccgccttcgccgaccgcttcccctatcaggaaaccgacgatcaggac
cgcgcgatcggcgatgtgctcgaagacatggcgtcgggacgtccgatggaccggctggtc
tgcggcgacgtcggtttcggcaagaccgaggttgcactgcgcgcggccttcgtcgccgcg
atggcgggcgtgcaggtcgcggtggtcgttcccaccaccctgctcgcacggcagcatttc
accaatttcgtcgagcgcttcaaaggtttccctgtcaacatcggccgcctgtcgcgcctc
gttcccgccgccgaagccgcaaggacccgcgacggtctcgccagcggccagatcgatatc
gtcgtcggcacccacgccgtgattgcgaaatcggtcgaattcaagaatctcggcctcgtc
atcgtcgacgaagaacagcgcttcggcgtcgtccacaaggagcggctgaagcagctcaag
acggacgtccatgtgcttacccttaccgccactccgatcccgcgcacgctccagatggcg
atgtcgggccttcgcgaactcagcgtcatccagacgccgcccgtcgaccgcctcgcggtc
cgcacctatgtcgccccatgggatcccgtcgtgatccgcgaagcgctgctccgcgagcat
gaccgtggcggccagagcttcttcgtcaccccgcggatcaaggatctccccgacatcgag
gagttcctgcgcacgcgggtgcccgaaatcaaatatgtcgtcgcgcacggccagatggca
ccgggcgaggtcgaggagcggatgagcgctttctacgaccgcaaatatgacgtgctcgtc
tcgaccaccatcgtcgagagcggcctcgatatcccgagcgccaacacgctgatcgtccac
cgcgccgaccgcttcgggcttgcgcagctctaccagcttcgcggccgcgtcgggcgctcg
aagacgcgcgcctatgcttatctgacaacattggaaggcggcgcgatcaccgacaccgcc
gaaaagcgacttaaactactcggcgacctcgacacattgggcgccggcttccagctcgcg
agccacgacctcgacattcgcggcgccggcaatctcgtcggcgacgaacagtcgggccat
atccgcgaggtcggcttcgaactctatcagtcgatgctcgaggaagcgatcctcgttgcc
aaggccgaaggcatgggcgccgcgccgccgcgcgaagcgctgtcgccggtgatcaccgtc
gatgcgccgatcctgatccccgaggattatgtccccgacctgccgctgcgcatggcgctc
tatcgccgcctcaacgaggccggcgatcgcccggcgctcgatgcctttgcggccgagatg
atcgaccgcttcggtcccttgccgcccgaaaccgcgaacctgatccagctcatggagatc
aaggcgaacgccaagctcgccggtatcgccaagctcgacgtcgggacgaagggcgcgctg
gtgagcttccacggtgaccagttcgccaacgtcccgggcctgatcgcctatgtcgagcgg
ctgaaaggccgcgcgcgcatccgccccgacaacaagctatcggtgagcggcgactggatg
agcacgggcgcgcgcctcaatggcgcgctgcaactgtcaaagggattggggaagctggcg
cggcaggcgggctaa
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