Sphingopyxis sp. J-6: V6U71_16730
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Entry
V6U71_16730 CDS
T10764
Symbol
addB
Name
(GenBank) double-strand break repair protein AddB
KO
K16899
ATP-dependent helicase/nuclease subunit B [EC:
5.6.2.4
3.1.-.-]
Organism
spjj Sphingopyxis sp. J-6
Brite
Enzymes [BR:
spjj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
V6U71_16730 (addB)
DNA repair and recombination proteins [BR:
spjj03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
V6U71_16730 (addB)
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Gene cluster
GFIT
Other DBs
NCBI-ProteinID:
XMG39477
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Position
3509784..3512759
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AA seq
991 aa
AA seq
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MTQLMSKPDVFSIPVHRAFADALVAGLIARFADGTLGLAEGLILLPSNRAKSAVQAAFVR
AGGAGLLMPRLAVIGDADLDESIGIALDAIDVAEPIAPAIDTLRRRLLLADLIERHTPTG
EAPIRGAAAFQLADGLARAIDQLHYEEVPVSALVDLDLGAFAGHWQASLARLRILVDHWP
AVLAATGHIDRAARRNRLLERVTAAWRSAPPAPFVVAAGITTAAPAIARLLRTVAGLERG
MVVLPGVDCGMATEEWDALGPTRPDPDNPARPIETHPQYHLKLLLDRMGVAREEVRAWDA
GSEFDGPEARAAFVSLLFAPADFTGQWQTTGDLSAATAGIAGAVFADDGQEAQGIALLMR
EAVETPGRTAALVTPDRGLAERVAAALARWEISVDDSAGQPLSRTPPGALLLLLAELAAS
FDPVALIALLGHPLVRKGEGRTTWLDQVRRLDLILREPGLAPGWDGVSARIAARAADPKA
RGHPLAAELAPWWDELSALGAALAPFAAGQTPPASLLAALQGALEWLSGDAVWTGPAGRA
LAEMFDQWTLARGDGPALVDPAEFPAMLGQLLTQASVRPPYGGHPRLFIWGLLEARLQRA
DLMILGGLDEGRWPAATQPDPWLAPGIRRLLGLPAPERQQGMAAHDFAGALGAREIVVTR
AARSGGDPVVASRFWLRLSALAGDLPEPAPGGVPLTRLAAMLDVPPGDARPATRPAPRPP
ADARPRRISVTGVDRLARDPFAFYADRMLGLSALDPLSAAPDPRWRGTRVHRLFEDWVRG
GATRDGFEAELTALGADPALDEIARAFWLPRIEPALRWAAAQVWNAGGRAPLAVEASGEI
VVDGLTLHGKADRIDRTEGGSLAIVDYKSGGAPSAKAAFDKLDSQLGLLGLIAQRGGMKD
IAAAPVEALEYWSLRPDRRAGGAGKISNTYGSRSDLKSAEQAIDHASDALAELAALYLFG
DAPFVPGELGGYGDYDQLMRRDEWFGRGEAD
NT seq
2976 nt
NT seq
+upstream
nt +downstream
nt
atgacgcagcttatgtcgaagcccgacgtcttctcgatcccggtccatcgggccttcgcc
gacgcgcttgtcgccgggctgatcgcgcgctttgccgatggtacgctggggctcgccgaa
ggattgatcctgctgccgagcaaccgcgccaagagcgcggtgcaggcggcgttcgtccgc
gctggcggcgccgggctgctgatgccgcggctggcagtgatcggcgacgccgacctcgac
gaatcgatcgggatcgcgctcgatgcgatcgacgtcgccgagccgattgcgccggcgatc
gatacgctgcgccgccgcctgctcctcgccgatttgatcgagcggcatacgcccacgggc
gaagcgccgatccgcggcgctgcggcgttccagctcgccgacgggctcgcacgcgcgatc
gaccagctccattatgaggaggtgccggtatcggcgctcgtcgacctcgacctcggcgcc
tttgccggccactggcaggcgtcgctcgcccggctgcgcatccttgtcgaccattggccc
gcggtgttggcggcgacgggccatatcgaccgggcggcgcggcgcaaccggctgctcgag
cgggtgacggcggcgtggcgcagcgccccgcccgcgccctttgtggtcgcggcggggatc
accaccgccgcgcccgcgatcgcacggctgctgcgcaccgtcgccggtctggagcgcggg
atggtagtgctgcccggcgtcgattgcggcatggccaccgaggaatgggacgcgctgggc
ccgacgcggccggaccccgataatccggcgcgcccgatcgagacgcacccgcaatatcat
ctgaagctgctgctcgaccgcatgggggtggcgcgcgaggaggtccgggcgtgggacgcg
gggtcggagttcgacgggcccgaagcgcgcgcggccttcgtctcgcttctcttcgccccc
gccgatttcaccggccagtggcagacgacgggcgacctgtcggcggcgaccgccgggatc
gcgggcgccgtcttcgccgacgacgggcaggaggcgcaggggatcgcgctgctgatgcgc
gaggcggtcgagacgccggggcgcaccgcggcgctggtgacccccgaccgcgggctggcc
gaacgcgtcgcggcggcgctcgcgcgctgggagataagcgtcgacgacagcgccgggcag
ccgttgtcgcgcacaccgccgggggcgctgttgctgctgctcgccgaactcgccgcgagc
ttcgatccggtggcgctgatcgcgctgctcggccacccgctggtccgcaagggcgaaggg
cggacgacgtggctcgatcaggtacggcggctcgatctgatcctgcgcgagcccgggctg
gcgccgggttgggacggggtgtcggcgcggatcgcagcgcgcgccgccgacccgaaagcg
cgcgggcacccgctggcggcagaactggcgccgtggtgggacgaattgtccgcgctcggc
gcggcgctggcgccgtttgcggcagggcagacgccgcccgcgagcttgctcgcggcgctg
cagggcgcgctcgaatggctgagcggcgacgcggtctggacggggccggcaggacgggcc
ctcgccgagatgttcgaccagtggacgctggcgcggggcgatggcccggcgctggtcgat
cccgccgagtttcccgcgatgctggggcagcttctgacgcaggcgagcgtgcggccgcct
tacggggggcatccgcgcctgttcatctgggggctgctcgaggcacggttgcagcgcgcc
gacctgatgatcctcggcgggctcgacgaggggcgctggcccgccgcgacgcagcccgac
ccgtggctcgcccccggcatccgccgcctgctcggcctgcccgcgcccgaacggcagcag
gggatggcggcgcacgacttcgccggggcgctcggcgcgcgcgagatcgtcgtgacgcgc
gcggcgcggagcggcggcgatccggtcgttgcgtcgcgcttctggctgcggctgtcggcg
ctcgccggcgacctgcccgagccggcgccgggcggggtgccgctgacgcggcttgcggcg
atgctcgacgtgccgcccggcgatgcgcgcccggccaccagaccggcgccgcgtcccccc
gcggacgcgcggccgcggcggatcagcgtcaccggggtcgacaggctggcccgcgatccc
ttcgctttctatgccgaccgcatgctcggcctgtcggcgctcgacccgctgagcgccgcg
cccgacccgcgctggcgcgggacgcgggtgcacagattgttcgaggattgggtgcgcggc
ggtgcgacgcgcgacggcttcgaggccgaactcaccgcgctcggcgccgacccggcgctc
gacgagattgcgcgcgccttctggctgccgcgtatcgagcccgcgctccgctgggccgcc
gcacaggtctggaacgccggaggacgcgcgccgctggcggtcgaggcgtcgggcgagatc
gtcgtcgacggcctcaccctgcacggcaaggccgaccgcatcgaccggacggaaggcggc
agcctggcgatcgtcgattataaatcaggcggagcgccgagtgccaaggcggcattcgac
aagctcgacagccagcttggcctgctcggcctgatcgcgcagcgcggcgggatgaaggac
attgccgcggcgccggtcgaggcgctcgaatattggagcctgcgccccgaccgccgcgcc
ggcggggccggaaaaatctcgaatacctatggttcgcgtagcgacctcaagagcgccgaa
caggcgatcgaccatgcgagcgacgcgctcgccgaacttgcggcgctctatctgttcggc
gacgcgcccttcgtgccgggcgagcttggcggctatggcgattacgaccagttgatgcgc
cgcgacgaatggttcggccggggcgaggcggactga
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