Sphingopyxis sp. J-6: V6U71_19715
Help
Entry
V6U71_19715 CDS
T10764
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
spjj Sphingopyxis sp. J-6
Brite
KEGG Orthology (KO) [BR:
spjj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
spjj03016
]
V6U71_19715
Enzymes [BR:
spjj01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
V6U71_19715
Transfer RNA biogenesis [BR:
spjj03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
V6U71_19715
Prokaryotic type
tRNA splicing ligases
V6U71_19715
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
DUF4514
Motif
Other DBs
NCBI-ProteinID:
XMG40049
LinkDB
All DBs
Position
complement(4167311..4168537)
Genome browser
AA seq
408 aa
AA seq
DB search
MTQTTFEVMNVEGGRPVKMWTRGVPVEDMARAQLTKAAKMPFVFKHVAAMPDVHVGIGAT
VGSVIPTRGAVIPAAVGVDIGCGMMAARTTLMAHDLPDNLEGIRSAIEAAVPHGRSVGRS
KRDSGSWGDPPAAIVDAWATLAERFGRIVAKHPRLKNTNNLTHLGTLGTGNHFIELCLDQ
EARVWVMLHSGSRGVGNAIGTYFIELAKQDMRKWFINLPDVDLAYFPEGTDHFDDYVEAV
GWAQDFAALNRRMMMANVIAALRLQIAKPFEAEAEAVNCHHNYVTRENHFGENVLVTRKG
AVRAAKGTMGIIPGSMGAKSFIVRGLGNAESFDSCSHGAGRVMSRTAAKKLVTLDEHIAD
TAGVECRKDEGVIDETPKAYKPIEAVMAAQADLVEIVHTLKQVVCVKG
NT seq
1227 nt
NT seq
+upstream
nt +downstream
nt
atgacccagacgacctttgaagtgatgaatgtcgagggcggacgcccggtcaagatgtgg
acgcgcggcgttcccgtcgaggatatggcgcgcgcgcagctgaccaaggcggcgaaaatg
ccgttcgtgttcaagcatgtcgccgcgatgcccgacgtccatgtcggcatcggcgcgacc
gtcggatcggtgatcccgaccaggggcgcggtgatcccggccgccgtcggcgtcgacatc
ggctgcggcatgatggccgcgcgcacgacgctgatggcgcacgatctgcccgataatctg
gagggcatccgcagcgcgatcgaggcggcggtgccgcacggacgttcggttggccgttcc
aagcgcgacagcggctcgtggggcgacccgccggccgcgatcgtcgacgcctgggcgacg
ctcgccgaacgcttcggacgcatcgtcgccaagcatccgcggctgaagaacaccaacaac
ctgacgcatctggggacgctcggaacgggcaaccatttcatcgagctgtgcctcgaccag
gaagcgcgggtttgggtgatgctgcattcgggatcgcgcggtgtcggcaatgcgatcggc
acctacttcatcgaactggcgaagcaggacatgcgcaagtggttcatcaacctgcccgac
gtagatctggcctatttcccggaggggaccgaccatttcgacgattatgtcgaggcggtg
ggctgggcacaggactttgcggcgctgaaccggcgcatgatgatggcgaacgtcatcgcg
gcgctgcggctccagatcgccaagcccttcgaggccgaggccgaagcggtgaactgccat
cacaattatgtgacgcgcgagaatcacttcggcgagaatgtgctcgtcacccgcaagggg
gcggtgcgtgcggcgaaggggacgatggggatcatcccgggttcgatgggcgcgaaatcg
ttcatcgtgcgcgggctgggcaacgccgaaagcttcgatagctgcagccatggcgccggc
cgcgtcatgagccgcaccgcggcgaaaaagctcgtcaccctcgacgagcatatcgccgac
accgcgggcgtcgaatgccgcaaggacgaaggcgtcatcgacgagacgccgaaagcctac
aagccgatcgaggcggtgatggcggcgcaggccgacctcgtcgagatcgtccatacgctg
aagcaggtggtgtgcgtgaaggggtga
DBGET
integrated database retrieval system
