Sphingopyxis sp. J-6: V6U71_20025
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Entry
V6U71_20025 CDS
T10764
Symbol
dnaQ
Name
(GenBank) DNA polymerase III subunit epsilon
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
spjj Sphingopyxis sp. J-6
Pathway
spjj03030
DNA replication
spjj03430
Mismatch repair
spjj03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
spjj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
V6U71_20025 (dnaQ)
03430 Mismatch repair
V6U71_20025 (dnaQ)
03440 Homologous recombination
V6U71_20025 (dnaQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
spjj03032
]
V6U71_20025 (dnaQ)
03400 DNA repair and recombination proteins [BR:
spjj03400
]
V6U71_20025 (dnaQ)
Enzymes [BR:
spjj01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
V6U71_20025 (dnaQ)
DNA replication proteins [BR:
spjj03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
V6U71_20025 (dnaQ)
DNA repair and recombination proteins [BR:
spjj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
V6U71_20025 (dnaQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
DNA_pol_A_exo1
RNase_H_2
Rv2179c-like
DUF3131
Motif
Other DBs
NCBI-ProteinID:
XMG40107
LinkDB
All DBs
Position
4227614..4228312
Genome browser
AA seq
232 aa
AA seq
DB search
MREIIFDTETTGFDPKTGDRLVEIGCIELVDRRETGQSFHAYFNPERDMPAAAEAVHGLS
IQFLSDKPLFATRVDELLEFLGDAPLIAHNAVFDFGFVNAELARAGRPALDMARMCCTVQ
MARKLHPGAKHSLDALCTRYGIDRSHRVKHGALLDAELLAHLYIEMTGGRQIGLGLAASP
AAAPVAATAAAAPRTGARPFREPRPHIASAAELARHAEFVAALNQPLWLDTV
NT seq
699 nt
NT seq
+upstream
nt +downstream
nt
atgcgagagattatcttcgataccgaaaccacggggttcgatcccaaaaccggggacagg
ctggtcgaaatcgggtgcatcgaactggtcgaccgccgcgagacgggccagagcttccac
gcctatttcaaccccgaacgcgacatgcccgcagccgccgaagcggtgcacggcctgtcg
atccagttcctgtcggacaagccgctgtttgcgacgcgtgtcgacgaactgctcgaattt
ctcggcgacgcgccgctgatcgcgcacaacgccgtgttcgacttcggtttcgtcaacgcc
gaactggcgcgcgccggccggccggcgctcgacatggcgcgcatgtgctgcacggtccag
atggcgcgcaagctgcatccgggagcgaaacacagcctcgacgcgctctgtacgcgctac
ggcatcgatcgcagccaccgcgtcaagcatggcgccttgctcgacgccgaactgctcgcc
catctgtacatcgaaatgaccggcgggcggcagatcgggctcgggctggccgcctcgcct
gccgccgccccggtcgctgcgactgccgccgcggccccgcgcaccggcgcgcgtccgttt
cgcgaaccccgcccccatatcgcatcggccgccgaacttgcgcgccatgccgaatttgtc
gcagcgctgaaccagccgctgtggctcgatacggtgtga
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