Sphingomonas sp. J315: LRS08_09465
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Entry
LRS08_09465 CDS
T11733
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
spjn Sphingomonas sp. J315
Pathway
spjn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spjn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LRS08_09465 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
spjn03021
]
LRS08_09465 (rho)
03019 Messenger RNA biogenesis [BR:
spjn03019
]
LRS08_09465 (rho)
Transcription machinery [BR:
spjn03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
LRS08_09465 (rho)
Messenger RNA biogenesis [BR:
spjn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
LRS08_09465 (rho)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
ATPase_2
S1CSD-TOTE-2
Spore_III_AA
AAA_22
NACHT
GpA_ATPase
AAA_25
Fungal_virus_P2_C
AAA_14
AAA
Motif
Other DBs
NCBI-ProteinID:
UUY01230
LinkDB
All DBs
Position
1863536..1864792
Genome browser
AA seq
418 aa
AA seq
DB search
MHLKDLKKTAPAELVSMAEELGVESASTLRKQDLMFAILKAQAENGELIMGEGTIEVLQD
GFGFLRSPQSNYLAGPDDIYVSPNQVRKFGLRTGDTVEGEIRAPKDGERYFALTKLVSVN
FDDPDAVRHRVNFDNLTPLYPDQKLTLDPADPTQKDKSARVIDIVSPQGKGQRTLIVAPP
RVGKTVMLQNIAKAITDNHPEVFLLVLLIDERPEEVTDMQRSVKGEVVSSTFDEPATRHV
QVAEMVIEKAKRLVEHKKDVVILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRPKRF
FGAARNIEEGGSLSIIATALIDTGSRMDEVIFEEFKGTGNSEIVLDRKVADKRIFPALDV
GKSGTRKEELLLDKPTLSKMWVLRRILMQMGTTDAMEFLLDKMKDSKTNEDFFDSMNQ
NT seq
1257 nt
NT seq
+upstream
nt +downstream
nt
atgcacttgaaagatttgaagaaaaccgcgcccgccgaactggtgtcgatggccgaggaa
cttggtgtcgaaagcgcgtcgacgctgcgcaagcaggatttgatgttcgcgatcctcaag
gcccaggccgagaatggcgaactgatcatgggcgagggcacgatcgaggtgcttcaggac
ggcttcggctttctgcgcagcccccagtccaactatctcgctggtcccgacgacatctat
gtctcgcccaatcaggtccgcaaattcggcctgcgcacgggcgacaccgtcgaaggtgaa
attcgcgcccccaaggatggcgagcgctattttgcgctgaccaagctggtcagtgtcaat
ttcgacgatcccgacgccgtccgccaccgcgtcaatttcgacaacctgaccccgctttac
ccggatcagaagctcacgctcgaccccgccgatccgacccagaaggataagtcggcgcgg
gtcatcgacatcgtgtcgccccagggcaagggccagcgcacgctgatcgtcgcaccgccg
cgcgtcggcaagacggtgatgctgcagaacatcgccaaggcgatcaccgacaaccatccc
gaggtgttcctgctcgtcctgctgatcgacgagcgacccgaggaagtcaccgacatgcag
cgcagcgtgaagggcgaggtggtcagctcgaccttcgatgaacccgccacgcgccatgtc
caggtcgccgaaatggtgatcgaaaaggccaagcgcttggtcgaacacaagaaggatgtc
gtcatcctgctcgattcgatcacccgcctcggccgcgcctacaacaccgtcgtgcccagc
tcgggcaaggtgctgaccggcggtgtcgacgccaatgcgctccagcggcccaagcgcttc
ttcggcgccgcgcgcaacatcgaggagggcgggtcgctttcgatcatcgcgaccgcgctg
atcgacaccggcagccgcatggacgaggtgatcttcgaagagttcaagggcaccggcaac
tccgaaatcgtgctcgaccgcaaggtcgcggacaagcgcatcttcccggcgctcgacgtc
ggcaagagcggcacgcgcaaggaagagctgctgctcgacaagccgacgctgtcgaagatg
tgggtgctgcgccgcatcctcatgcagatgggcaccaccgatgcgatggagttcctgctc
gacaagatgaaggattcgaagaccaacgaagacttcttcgacagcatgaatcagtga
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