Sphingobium sp. JS3065: NUH86_02770
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Entry
NUH86_02770 CDS
T10812
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
spjs Sphingobium sp. JS3065
Pathway
spjs03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spjs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NUH86_02770 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spjs03019
]
NUH86_02770 (pnp)
03016 Transfer RNA biogenesis [BR:
spjs03016
]
NUH86_02770 (pnp)
Enzymes [BR:
spjs01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
NUH86_02770 (pnp)
Messenger RNA biogenesis [BR:
spjs03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
NUH86_02770 (pnp)
Transfer RNA biogenesis [BR:
spjs03016
]
Prokaryotic type
tRNA degradation factors
NUH86_02770 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
S1
RNase_PH_C
PNPase
KH_1
S1_RRP5
KH-I_KHDC4-BBP
S1_2
OB_RRP5_4th
Motif
Other DBs
NCBI-ProteinID:
UZW55744
LinkDB
All DBs
Position
1:565498..567846
Genome browser
AA seq
782 aa
AA seq
DB search
MFDVKKVSIELGGKTLTLETGRIARQADAAVLATYGETVVLCAVTAAKSVKEGQDFFPLT
VHYQEKYSAAGRIPGGFFKRERGATEKETLVSRLIDRPIRPLFPEGFYNEINVIAQVLSF
DGESEPDIVAMIAASAALTLSGVPFLGPIGAARVGYKDGEYQLNPSLDEVKTGELDLVVA
ATGNAVMMVESEARELSEDVMLGAVLFAHEASKKIVNAIIDLAEKAAKDPWDVAKGDDLE
DLKKKLKKLIGKDITAAYKLTDKSARSNALNEARAKAKAQFVADGLDAQTVMAGIKLTKK
LEAEIVRGAILKDGKRIDGRTTTQIRPIEAMVGFLPRTHGSALFTRGETQSICTTTLGTK
DAEQMIDGLNGVYYENFMLHYNFPPYSVGEVGRFGAPGRREVGHGKLAWRALHPVLPSKD
EFPYTIRVLSDITESNGSSSMATVCGGSLSMMDAGVPLKRPVSGIAMGLILEGKNFAVLS
DILGDEDHLGDMDFKVAGTEAGITTMQMDIKVAGITQEIFEVALRQAKEGRAHILGEMSK
ALSSTRTELSAHAPRIETIQIDKSKIRDVIGTGGKVIREIVAETGAKVDIDDEGIIKISS
SDTAQIEAAKKWILGIVEEAEVGKVYTGKVVNIVDFGAFVNFMGGKDGLVHVSEMKNERV
EKPTDVVSEGQEVKVKVLEIDPRGKVRLSMRVVDQETGEELEDTRPPREAREPRGDRGDR
GDRGDRGRGPRRDGGDRGGRGGDRGGDRGPRRDRGPRSEGGKGNGGDDDGSNAGLPDFLT
QD
NT seq
2349 nt
NT seq
+upstream
nt +downstream
nt
atgttcgatgtaaagaaggtatcaatcgagctgggcggcaaaaccctcacgctcgaaacc
ggccgcattgcgcgtcaggccgacgccgccgtgctggcgacctatggcgagacggtggtg
ctgtgcgccgtgaccgccgccaagtcggtgaaggaagggcaggacttcttcccgctgacc
gtccactatcaggaaaaatattcggccgccggtcgcattccgggcggcttcttcaagcgt
gagcgcggcgcgacggaaaaggaaacgctggtttcccgcctgatcgaccgcccgatccgt
ccgctgttccccgaaggtttctataacgaaatcaacgtcatcgcccaggtgctgagcttc
gacggcgaaagcgagccggatatcgtggcgatgatcgccgcctcggccgcgctgacgctt
tccggcgtgcccttcctgggcccgatcggcgccgcccgcgtcggttacaaggatggcgaa
tatcagctcaacccgtcgctggacgaagtgaagaccggcgaactcgacctggtcgtcgcc
gccaccggcaacgccgtgatgatggtcgaatccgaagccagggaactgtcggaagacgtc
atgctcggcgccgtcctgttcgcgcatgaagcgtcgaagaagatcgtcaacgcgatcatc
gacctcgctgaaaaggccgcgaaggatccgtgggacgtcgccaagggcgacgatctggaa
gatctgaagaagaagctcaagaagctgatcggcaaggacatcaccgccgcctacaagctg
accgacaagtcggcccgctcgaacgcgctgaacgaagcccgcgccaaggcgaaggcccag
ttcgtcgccgatggcctggacgcccagaccgtcatggccggcatcaagctgaccaagaag
ctggaagcggaaatcgttcgcggcgccatcctgaaggacggcaagcgcatcgacggccgc
accaccacgcagatccgtccgatcgaggcgatggtgggcttcctgccgcgcacccatggt
tcggcgctgttcacccgtggcgagacgcagtcgatctgcaccaccacgctgggcaccaag
gacgccgagcagatgatcgacggcctgaacggcgtctattatgaaaacttcatgctgcac
tataacttcccgccctattcggtcggtgaagtcggccgcttcggcgcgccgggccgtcgc
gaagtcggccatggcaagctggcatggcgcgccctgcacccggtcctgcccagcaaggac
gagttcccctacaccatccgcgtgctgagcgacatcaccgagtccaacggctcgtcctcg
atggcgacggtctgcggcggttcgctgtccatgatggacgcgggcgttccgctgaagcgt
ccggtgtcgggcatcgccatgggcctgatcctggaaggcaagaatttcgctgtcctcagc
gacattctgggcgatgaggatcacctcggcgacatggacttcaaggtggcgggcacggaa
gcgggcatcaccaccatgcagatggacatcaaggtcgccggcatcacgcaggaaatcttc
gaagtcgcgctgcgccaggcgaaggaaggccgcgcccatatcctgggtgagatgagcaag
gccctgtcctcgacccgcaccgaactgagcgctcatgctccgcgcatcgagacgatccag
atcgacaagtcgaagatccgcgacgtcatcggcaccggcggcaaggtcatccgcgaaatc
gtcgcggaaaccggcgcgaaggtggacatcgatgacgagggcatcatcaagatcagctcg
tccgacaccgcccagatcgaagccgccaagaagtggattctcggcatcgtcgaggaagcg
gaagtcggcaaggtctacaccggcaaggtcgtcaacatcgtcgatttcggtgcgttcgtg
aacttcatgggcggcaaggacggtctcgtccacgtctccgaaatgaagaatgagcgcgtc
gaaaagccgaccgacgtcgtgtcggaaggccaggaagtgaaggtcaaggttctggagatc
gacccgcgcggcaaggttcgcctgtcgatgcgcgtcgtcgatcaggaaaccggcgaagaa
ctggaagacacccgtccgccccgcgaagcccgcgaaccccgtggtgatcgcggagaccgt
ggtgatcggggcgaccgtggccgtggcccgcgtcgtgacggcggagaccgtggcggccgc
ggcggcgatcgcggcggcgatcgtggtcctcgccgtgaccgtggcccgcgcagcgaaggc
ggcaagggcaatgggggcgacgacgacggctccaacgccggtctgcccgacttcctgacc
caggactga
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integrated database retrieval system
