Sphingobium sp. JS3065: NUH86_03560
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Entry
NUH86_03560 CDS
T10812
Symbol
traA
Name
(GenBank) Ti-type conjugative transfer relaxase TraA
Organism
spjs Sphingobium sp. JS3065
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MobA_MobL
AAA_30
AAA_19
Viral_helicase1
PIF1
TraI_hel_assoc_N
SH3_13
UvrD_C_2
Herpes_Helicase
Helicase_RecD
AAA_11
AAA_16
Motif
Other DBs
NCBI-ProteinID:
UZW55883
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All DBs
Position
1:722533..725478
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AA seq
981 aa
AA seq
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MAIYHFSAKVISRAAGSSAVAAAAYRSASRLRDERLGRHHDFSNKPGVVHSEIMLPDGAP
EEWRDREQLWNDVEAAELRKDAQLAREIEFAIPREMNQADGIELARDFVQREFVDWGMVA
DLNVHWDIGPDGNPKPHAHVMLGMREVTEEGFGAKVRDWNRTELLTHWREAWAEHVNQRL
AQLDIDARIDHRSLEVQGIDLEPQHKIGPAASRMVEQGLESERLDEHHAIARANGEKLLA
DPAIALDAITHQQSTFTTHDLAMFVHRHSEGKDQFDQVMAAVRSSPELVKLGKDGRGEDR
FTSRSMLETEQRLERATATLDARRHHGVGERHLERALAHAADRGMLLSPEQRGAFEHVTN
SRGISNVIGYAGTGKSAMLGVAHEAWESAGYTVQGAALSGIAAENLESGSGIASRTIASL
EHQWAQDRELLTNRSILVIDEAGMIGTRQMERVMAEAQKRGAKVVAVGDPEQLQAIEAGA
SFRSIAERHGAVEIKTVRRQSEDWQRQATRQLANGRTGEALAAYDEAGHVHAAGTREQAR
ETLIDRWDKERQAHPDANRIILTHTNEEVRELNEAARGRMRAAQMLGDDINLVVERGSRA
FATGDRVMFLQNERSLEVKNGTLGTVEHVSPIAMRVRTDDGRAIAFDLKHYAHVDHGYAA
TIHKAQGITVGNVHVLATPSLDRHAAYVALSRHRDSVDLHYGKDDFADQSKLVRALSRER
GKDMASDYACVTEPVPQVQPRRGIFDGLKLKPSPLDRIPTNPNFDGLRLKVSKDLAQPTA
PPPEIVSTAPGAESREAQLRHERTDALQRHARAIDAIYSTRDRGGRESPEQLAELRSARQ
AFEEQRPDGPRDAEVAYAKDPHLASEAAQGRTARAIRALQLETELRTNPELRADRFITRW
NDLSGRVDRHYAAGNMDAYKSTRSAMADMARSLHRDPQLESLLAIRKAQLGITMMDSQRS
LGAQLAFDHGIDLGRGRGLGL
NT seq
2946 nt
NT seq
+upstream
nt +downstream
nt
atggcgatctaccacttctcggccaaagtgatttcccgcgccgccggctcctcggcggtg
gcagcggccgcctatcgctcggcctcgcgcctgcgtgatgagcgcctgggccgccaccac
gacttctccaataagcccggcgtcgtgcacagcgaaatcatgctgcccgatggcgcgccg
gaggaatggcgcgaccgtgaacagctctggaatgatgtcgaggcggcggaactgcgcaag
gacgcgcagctcgcccgcgagatcgagttcgccattccccgcgagatgaaccaggcggac
gggatcgagcttgcccgcgacttcgtgcagcgtgaattcgtcgactggggcatggtcgcc
gatctcaatgtccattgggatatcggacctgacggaaatcccaagccccatgcccatgtt
atgttggggatgcgcgaagtcaccgaagaaggctttggcgccaaagtccgcgactggaac
aggaccgaacttctgacccactggcgcgaggcctgggccgaacatgtcaatcaacgcctc
gcccagctcgatatcgacgcccggatcgatcaccgatctttggaagtgcagggcattgac
ctcgagccgcagcacaagatcggtcccgccgcctcgcgcatggtcgagcagggactggag
agcgagcggctcgacgagcaccacgccattgcccgtgccaatggcgagaagctgctcgct
gatccggccatcgccctggatgcgatcacccaccagcagtcgaccttcaccacccatgac
cttgccatgtttgtgcaccggcacagcgaagggaaggaccagttcgatcaggtgatggcg
gcggttcggtcctcgcccgagctggtgaaactgggtaaggatggccggggtgaggacagg
ttcacctcaaggtcgatgctggaaaccgagcaacggctggaacgtgccaccgcaacgctc
gacgcgcggcgccatcatggcgtgggcgagcggcatctcgagcgggcgttggcccacgcg
gcggatcggggaatgctgctctcgcccgaacaacgcggcgcgttcgaacatgtgaccaac
tctcgcggcatcagcaacgtcatcggctatgccggcaccggcaagagcgcgatgctgggc
gtcgcgcacgaagcatgggaatcggcaggctacaccgtgcagggcgcggccctatccggc
atcgccgccgagaacctcgaaagcggctcgggcattgccagccgcaccattgccagcctg
gagcatcaatgggctcaggatcgcgagttgctgaccaacagatcgatcctcgtcatcgac
gaggccggcatgatcggcacgcgccagatggagcgcgtgatggccgaggcccaaaagcgc
ggcgccaaggtcgtggctgtaggcgatcccgagcagcttcaggcgatcgaggcgggcgct
tcgttccgctctatcgccgagcgccatggcgcggtcgagatcaagaccgttcgccgccag
tccgaggactggcagcgccaggcgacgcgacagcttgccaacggtcggacgggcgaggca
ctcgccgcctatgacgaggcgggccatgtccatgccgccgggacgcgcgaacaggcacgt
gagacgctgatcgatcgctgggacaaggaacggcaggcacatcctgatgccaaccggatc
atcctcacccataccaacgaggaggtgcgcgaactcaatgaagccgcgcgggggcgcatg
cgcgccgcgcagatgttgggtgacgacatcaacctggtcgtcgagcgcggtagccgtgcc
tttgcgaccggcgaccgtgtcatgttcctgcaaaacgagcgcagcctggaggtgaagaac
ggcacgctcggcaccgtcgagcatgtcagtccgatcgccatgcgcgtgcgcaccgatgac
ggcagggccatcgccttcgatctcaaacactatgcccatgttgatcatggctatgccgcc
acgatccacaaggcgcagggcataaccgtgggcaatgtccacgtgctggcaacaccgagt
ctcgatcggcatgccgcctatgtcgcgctgtcccggcacagggacagcgtcgatctgcat
tacggcaaggacgacttcgccgatcagtcgaagttggtccgcgccctcagccgcgagcgt
ggcaaggacatggcgtcggactatgcctgcgtgaccgagcctgtcccgcaagtacagccc
aggcgcggcatcttcgacgggctcaagctcaaaccatcaccgctcgatcggatcccgaca
aatccgaacttcgatggcctgcggctcaaagtctcgaaggatctggcacaacccaccgcg
cctccgccggagatcgtttcgaccgcgcccggcgccgagagccgcgaggcacagctgcgg
cacgagcggacagatgcgctgcaacgccatgccagggcgatcgatgcgatctacagcacg
cgggatcgtggcggccgggaaagccccgagcagctcgccgagctcaggtctgcgcgccag
gcgtttgaggagcagcgcccggatgggccgcgcgatgccgaggtggcctatgccaaggac
ccacacctcgcgagcgaggcggcgcagggtcgcaccgcccgtgcgatccgcgcactgcag
ctggaaaccgagctgcgcaccaatcccgagttgcgggccgaccggttcatcacccgctgg
aacgacctctccggtcgggttgatcggcactatgccgccgggaatatggacgcctacaag
tccacgcgttcggccatggcggatatggcgaggagcctccaccgcgatccgcagctcgaa
tccctccttgccatccgcaaggcgcagcttggcatcaccatgatggacagccagcgctcg
cttggcgcccagctcgcgttcgaccacggcattgatcttggcaggggacgcgggctgggg
ctgtag
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