Sphingobium sp. JS3065: NUH86_11445
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Entry
NUH86_11445 CDS
T10812
Symbol
polA
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
spjs Sphingobium sp. JS3065
Pathway
spjs03030
DNA replication
spjs03410
Base excision repair
spjs03420
Nucleotide excision repair
spjs03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
spjs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NUH86_11445 (polA)
03410 Base excision repair
NUH86_11445 (polA)
03420 Nucleotide excision repair
NUH86_11445 (polA)
03440 Homologous recombination
NUH86_11445 (polA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
spjs03032
]
NUH86_11445 (polA)
03400 DNA repair and recombination proteins [BR:
spjs03400
]
NUH86_11445 (polA)
Enzymes [BR:
spjs01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
NUH86_11445 (polA)
DNA replication proteins [BR:
spjs03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
NUH86_11445 (polA)
DNA repair and recombination proteins [BR:
spjs03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
NUH86_11445 (polA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NUH86_11445 (polA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
5_3_exonuc
DNA_pol_A_exo1
DprA_N
HHH_5
Ribosomal_60s
HHH_2
HAMP_N3
HHH
Transposase_20
IMS_HHH
Motif
Other DBs
NCBI-ProteinID:
UZW54142
LinkDB
All DBs
Position
1:2351064..2353850
Genome browser
AA seq
928 aa
AA seq
DB search
MPQNHLYLVDGSGYIFRAYHQLPPLTNKHGQPVGAVYGYTTMLWKLADELGKAEGPTHLA
VVLDKGSHTFRNDMYDQYKANRPPAPEDLVPQFPMIRDATRAFSLPCIEEAGFEADDIIA
SYTKAAVAAGWHVTIVSSDKDLMQLIQPGVDMYDTMKNERRGADYVMTKFGVQPEQLGDV
LALMGDSVDNVPGIPGIGPKTAAKLISEYGNLEAALEAAPSMKKSKMQENLIAHADMARL
SRRLVALHDAMDLPEPLDDLTLKGIPLEPLQAFLEHHGFKSLLARAGAPAAAVAVATAAA
AVSEATPPAAPVHEEEPPIDRSLYETVVTEEALDRWIAAAHAEGLVAVDTETDMLDCVSC
ALVGVSLAVGPNAACYIPVGHGGKDMFAEKPDQLPLALVLGKLKPLLEDDSVLKIGQNLK
YDMTVLRRLGIEIAPYDDTIVMSFDLDAGQSLAGHGMDEAAKVHLGHICISFKDVCGAGK
SQISFAEVPLDKATEYAAEDADVTLRLWKLFKTRVANEGATRVYELVDRPLVGVIAKMEH
EGIKVDREALSRLSAEFTAGIAALETEIHGLAGQPFAIGSTQQLGAILFDKMGYKGGRKG
KSGAYSTDVTILEQLKAQGAEIAGKILDWRQLSKLKSTYTDALQAQINRDTGRVHTSYSL
SGAQTGRLSSTDPNLQNIPIRTEVGRQIRHAFVAEPGNVILAADYSQIELRLAAHMADVP
ALKEAFANGEDIHAATAQQLFGEVNRDTRGRAKTINFAILYGISRWGLAGRLEISADEAQ
DMISRYYERFPGISIYITDTIEKARSRGYTETLFGRKTWFPRIKASIQHERQGAERAAIN
APIQGTSADIIKRAMARMGPALAAEGLHKVKMLLQVHDELVFELPAGDVEQAGAVIRRVM
EGAAEPIVKLSVPLGVEIGHGPSWGAAH
NT seq
2787 nt
NT seq
+upstream
nt +downstream
nt
atgccccagaatcatctctacctcgtcgacggcagcggctatatcttccgcgcctatcac
cagcttccgcccctcaccaacaagcatggccagcccgtcggcgcggtctatggctacacc
accatgctctggaagctggccgacgaactgggcaaggccgaggggccgacccatctggcg
gtcgtgctggacaagggcagccacaccttccgcaacgacatgtacgaccagtataaggcg
aaccgcccacccgcgccggaagatctggtcccgcaattccccatgatccgcgacgccacc
cgcgccttctccctcccctgcatcgaggaagcggggttcgaggccgacgacatcatcgcc
agctacacgaaagccgccgtcgcggcaggctggcatgtcaccatcgtcagttccgacaag
gatctgatgcagcttatccagcccggcgtcgacatgtacgacacgatgaagaatgagcgg
cgcggcgccgactatgtgatgaccaaattcggcgtccagcccgaacaattgggcgacgtc
ctggccctgatgggcgacagcgtcgacaatgttcccggcatccccggcatcggtcccaag
accgccgccaagctgatcagcgaatatggcaatctggaagccgcgctggaggccgcgcct
tcgatgaagaagtcgaagatgcaggaaaatctcatcgcccatgccgacatggcgcgcctt
tcgcgccgcctcgtcgcgctgcacgatgcgatggacctgcctgagccgctggacgatctg
acgctcaagggcatccccctcgaaccgctgcaggccttcctcgaacatcatggcttcaag
tcgctgctcgcccgcgcgggcgcgcccgccgccgccgtggcggtagcgaccgcggccgcc
gccgtcagcgaagccacgccccccgccgccccggtccatgaggaagaaccgcccatcgac
cgcagcctctacgaaacggtggtgacggaggaagcgctggaccgctggatcgccgccgcc
catgcggaggggctggtcgcggtcgataccgagaccgacatgctggattgcgtgtcctgc
gcgctggtcggcgtcagcctggccgtcggtcccaacgccgcctgctacatccccgtcggc
catggtggaaaggacatgttcgcggagaagccggaccagcttcccctcgccctcgtcctc
ggcaaattgaagccgctgctggaggacgacagcgtcctcaagatcggccagaacctcaaa
tatgacatgacggtcctgcgccgcttgggcatagagatcgccccctatgacgacaccatc
gtcatgagcttcgacctggacgccgggcaaagcctggcgggccacggcatggacgaggcg
gcgaaggtccacttgggccatatatgcatcagcttcaaggatgtgtgcggcgccggcaag
agccagatcagcttcgcggaagtcccgctcgacaaggcgaccgaatatgccgcggaggat
gcggacgtcacgctgcgcctgtggaagctgttcaagacccgcgtcgccaacgaaggcgcg
acccgcgtctatgaactggtcgaccgcccgctcgtcggcgtcatcgcgaagatggagcat
gaaggcatcaaggtcgaccgcgaggcgctgtcccgcctgtcagccgaattcaccgcgggc
atcgccgcgctggagacggaaatccatggcttggcaggccagcccttcgccatcggctct
acccagcaactgggcgcgatcctgttcgacaaaatgggttacaagggcggccggaagggc
aagtccggcgcctattccaccgacgtcaccatcctggagcaattgaaggcccagggtgcc
gaaatcgccggaaaaatcctcgactggcgccagctttcgaaactgaaatccacctatacc
gacgcgctccaggcccagatcaacagggacaccggccgcgtccacaccagctacagcctg
tccggcgcgcaaaccggccgcctgtcctcgaccgaccccaatctccagaacatcccgatc
cgtaccgaagtgggccgccagatccgccacgccttcgtcgcggaaccgggcaatgtcatc
ctggcggcggactatagccagatcgaactgcgtctcgccgcccatatggcggacgtaccc
gcgctgaaggaagctttcgccaatggcgaggacatccatgccgccaccgcccagcaattg
ttcggggaagtcaaccgcgacacccgcggccgggccaagacgatcaacttcgcgatcctc
tacggcatcagccgctggggcctggccggacggctggagatcagcgccgacgaagcgcag
gacatgatcagccgctattatgagcgcttccccggcatcagcatctacatcaccgacacg
atcgaaaaggcacgctcaaggggctatacagagacccttttcggacggaagacatggttc
ccgcgcatcaaggcatctatccagcatgaacggcagggcgcagagcgcgccgcgatcaac
gcgccgatccagggcaccagcgccgacatcatcaagcgcgccatggcccgcatgggaccg
gcgctggcggcggaggggctgcataaggtcaagatgctgctgcaagtgcatgacgaactg
gtgttcgaactgcccgcaggcgatgtcgagcaggccggcgcggtcatccgccgcgtgatg
gaaggcgccgccgagccgatcgtgaaactcagcgtgccgctaggcgtcgaaatcggccat
ggtccaagttggggcgcggcgcattaa
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