Sphingobium sp. JS3065: NUH86_14020
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Entry
NUH86_14020 CDS
T10812
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
spjs Sphingobium sp. JS3065
Pathway
spjs03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spjs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NUH86_14020 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
spjs03021
]
NUH86_14020 (rho)
03019 Messenger RNA biogenesis [BR:
spjs03019
]
NUH86_14020 (rho)
Transcription machinery [BR:
spjs03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
NUH86_14020 (rho)
Messenger RNA biogenesis [BR:
spjs03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
NUH86_14020 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
ATPase_2
S1CSD-TOTE-2
AAA_22
Spore_III_AA
NACHT
AAA
AAA_25
AAA_14
GpA_ATPase
Motif
Other DBs
NCBI-ProteinID:
UZW54603
LinkDB
All DBs
Position
1:2862346..2863602
Genome browser
AA seq
418 aa
AA seq
DB search
MHLKDLKKKAPAELVTMAEELGVEGASTLRKQDLMFAILKVEAENGEQIMGEGTIEVLPD
GFGFLRSPEANFLAGPDDIYVSPNQVRKFGLRTGDTVEGEIRAPKDGERYFALTKLISVN
FDDPEVVRHRVNFDNLTPLYPTQKLTLDATDPTVKDKSARVIDIVSPQGKGQRALIVAPP
RTGKTVLLQNIAKAITDNHPEVFLIVLLIDERPEEVTDMQRSVKGEVVSSTFDEPAQRHV
QVAEMVIEKAKRLVEHKKDVVILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRPKRF
FGAARNIEEGGSLSIIATALIDTGSRMDEVIFEEFKGTGNSEIVLDRKVADKRIFPALDV
GKSGTRKEELLVDKAKLSKMWVLRRILMQMGTVDAMEFLLDKMKDSKTNEDFFDSMNQ
NT seq
1257 nt
NT seq
+upstream
nt +downstream
nt
atgcaccttaaggatctcaagaaaaaagcccccgccgaactggtgaccatggcggaggaa
ctgggcgtcgaaggcgcatcgaccctgcgcaagcaggacctgatgttcgcgatcctcaag
gtagaggccgaaaatggcgagcagatcatgggcgagggcacgatagaggtgctgcccgac
ggcttcggcttcctgcgcagcccggaagcgaatttcctcgccggtcccgacgacatctat
gtttcgcccaaccaggtccgcaagttcggcctgcgcaccggcgacacggtggaaggcgaa
atccgcgcgcccaaggatggcgagcgctatttcgcgctgaccaagctgatctcggtcaat
ttcgacgatcccgaagtggttcgccaccgcgtcaatttcgataacctgacgccgctttac
ccgacgcagaagctgacgctcgatgcgaccgacccgacggtcaaggacaagtcggcccgc
gtcatcgacatcgtctcgccccagggcaagggccagcgcgccctgatcgtcgcgccgccc
cgcaccggcaagaccgtgctgctccagaacatcgccaaggcgatcaccgacaaccatccc
gaagtcttcctgatcgtcctgctgatcgacgagcgtccggaagaagtcaccgacatgcag
cgcagcgtgaagggggaggtcgtctcctccaccttcgacgaaccggcgcagcgccatgtg
caggtggccgagatggtgatcgaaaaggccaagcgcctcgtggaacacaagaaggacgtg
gtgatcctgctcgattcgatcacccgccttggccgcgcctacaacacggtggtgccttcg
tcgggcaaggtgctgaccggcggcgtcgacgccaacgcgctccagcgtcccaagcgcttc
ttcggcgcggcgcgcaatatcgaggagggcggctcgctctccatcatcgcgaccgcgctg
atcgataccggcagccgcatggacgaggtcatcttcgaagagttcaagggcaccggcaac
tccgaaatcgtgctggaccgcaaggtcgcggacaagcgcatcttcccggccctggacgtc
ggcaagtcgggcacccgcaaggaagaactgctggtcgacaaggccaagctgtccaaaatg
tgggtgctgcgccgtatcctgatgcagatgggcacggtggacgccatggaattcctgctc
gacaagatgaaggattccaagaccaacgaagatttcttcgattcgatgaaccagtaa
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