Sphingobium sp. JS3065: NUH86_15030
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Entry
NUH86_15030 CDS
T10812
Name
(GenBank) CDC48 family AAA ATPase
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
spjs Sphingobium sp. JS3065
Pathway
spjs04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
spjs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
NUH86_15030
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spjs03019
]
NUH86_15030
03009 Ribosome biogenesis [BR:
spjs03009
]
NUH86_15030
04131 Membrane trafficking [BR:
spjs04131
]
NUH86_15030
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
spjs04147
]
NUH86_15030
Messenger RNA biogenesis [BR:
spjs03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
NUH86_15030
Ribosome biogenesis [BR:
spjs03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
NUH86_15030
Membrane trafficking [BR:
spjs04131
]
SNARE
SNARE associated proteins
Others
NUH86_15030
Autophagy
Aggrephagy
Other aggrephagy associated proteins
NUH86_15030
Exosome [BR:
spjs04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
NUH86_15030
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
AAA_16
RuvB_N
AAA_22
CDC48_2
AAA_5
AAA_33
AAA_2
AAA_14
TIP49
IstB_IS21
NACHT
nSTAND3
NPHP3_N
AAA_30
AAA_28
RNA_helicase
AAA_18
Mg_chelatase
AAA_7
AAA_3
AAA_19
AAA_11
ABC_tran
AAA_24
Sigma54_activat
AAA_17
TsaE
DUF815
Zeta_toxin
AAA_lid_PRS2_C
Vps4_C
Parvo_NS1
ATPase
NB-ARC
SLFN-g3_helicase
PhoH
bpMoxR
Viral_helicase1
AAA_25
Motif
Other DBs
NCBI-ProteinID:
UZW54780
LinkDB
All DBs
Position
1:3063160..3065451
Genome browser
AA seq
763 aa
AA seq
DB search
MAEEEIAGRRIQVANARPEDAGRGLARLPLAVMAELHLAEGDVIEIVGKRSTPARVVRPY
KEDEGLDVLRLDGLQRANAGVGSGDFVVIGKVEPRPAQRVVFAPAQNNLRLQGNPEALKR
VFFQRPLAAGDVVATAGQQQVPPGDMPPQLRQMLAAPAYALQEIRLVVVSTVPKGVVHID
AETEVELRAEYEEPRESRRADVTYDDVGGMADAIDQLREMVELPLRYPELFERLGVDPPK
GVLLHGPPGTGKTRLARAVANESEAEFFLINGPEIMGSAYGESEKQLREIFEAAAKSVPS
ILFIDEIDSIAPKRGSVTGETEKRLVAQLLTLMDGLEPRTNLVVIAATNRPEAIDEALRR
PGRFDREIIVGVPDERGRREILGIHTRGMPLGDKVDLSELARMTYGFVGADLAALTREAA
IETVRRFMPRLNLEEGTIPPDVLEELSVTREDFMAAIKRVQPSAMREVMVQAPNIGWADI
GGLDDAQMRLKEGVELPLKDPDAFRRIGIRPAKGFLLYGPPGTGKTLLAKAVAREAQANF
IATKSSDLLSKWYGESEQQIARLFARARQVAPTVIFIDELDSLVPARGGGLGEPQVTERV
VNTILAEMDGLEELQSVVVIGATNRPTLIDPALLRPGRFDELIYVPVPDQAGRKRILSIH
TGKMPLADDVDLDMLAERTERFTGADLEDLVRRAGLVALRQSLSVDKVTQAHFEAALEDT
RASVTPEMEREYEQIQATLKQSVMQVDPIGFVAPGMLRGRGKE
NT seq
2292 nt
NT seq
+upstream
nt +downstream
nt
gtggccgaagaggaaatcgcaggacgcaggatacaggtggccaacgcccggccggaagat
gcggggcgcggcctcgctcgccttccattggcggtgatggcggaactccatctggccgaa
ggcgacgtgatcgagatagtgggcaagcgctccacccctgcccgggtggtgcggccctat
aaggaggatgaggggctggacgtcctgcgcctcgacgggcttcagcgggccaatgccggg
gtgggatcgggcgacttcgtcgtgatcggcaaggtcgagccgcgccccgcccagcgtgtc
gtcttcgcacctgcacaaaataatttgcggttgcagggcaatcccgaagcgctgaagcgt
gttttcttccagcgcccgctcgccgccggcgacgtcgtcgccacggcgggacagcagcag
gtgccgcccggcgacatgccgccccaattgcggcagatgctggccgccccagcctatgcc
ctgcaggaaatccggctggtggtggtgtccaccgtgcccaagggcgtcgtccatatcgac
gccgaaaccgaagtcgaactgcgcgccgaatatgaggagccgcgcgaatcccgccgcgcc
gacgtcacctatgacgatgtcggcggcatggccgatgccatcgaccagttgcgcgagatg
gtggagctgccgctgcgctatcccgaactgttcgaacggctgggcgtcgatccgcccaag
ggcgtgctgctccatggcccgccgggcaccggcaagacgcggctggcccgcgccgtcgcc
aatgaatcggaagccgaattcttcctgatcaacgggccggagatcatgggttcggcctat
ggcgagtcggaaaagcagcttcgcgagattttcgaggccgccgccaagtccgtcccgtcg
atcctcttcatcgatgagatcgattcgatcgcgcccaagcgcggcagcgtgaccggcgag
acggaaaagcgcctggtcgcgcaattgctgacgctgatggacgggctggagccgcgcacc
aacctggtcgtcatcgccgcgaccaaccggccggaagcgatagacgaggcgctgcgccgt
cccggccggtttgaccgcgagatcatcgtcggcgtcccggacgagcgcgggcggcgggaa
attctgggcatccacacccgcggcatgccgctgggcgacaaggtcgacctcagcgaactc
gcccgcatgacctatggcttcgtcggcgcggatctggccgcgctgacccgcgaggcggcg
atcgagacggtccgccggttcatgccgcgcctcaatctggaggaagggacgatcccgccc
gacgtgctggaggaactctccgtcacgcgggaggatttcatggccgcgatcaagcgcgtc
caaccctccgccatgcgggaggtgatggtgcaggcgccgaacatcggctgggccgacatc
ggcgggctggacgatgcccagatgcgcctcaaggaaggggtggaactgccgctcaaggat
ccggacgccttccgccgcatcggcatccgcccggccaagggcttcctgctctacggcccg
cccggcaccggcaagacgctgctggcgaaggccgtggcgcgggaggcgcaggccaatttc
atcgccaccaaatcctccgacctgctcagcaaatggtatggggaaagcgaacagcagatc
gcccgcctcttcgcccgcgccaggcaggtcgcgccgacggtcatcttcatcgacgaactg
gacagtctcgtccccgctcgcggcggcggcctgggcgaaccgcaggtgacggagcgggtg
gtgaacaccatcctggccgagatggacgggctggaggaactgcaatcggttgtggtcata
ggcgccaccaaccggccgacgctgattgatccggcgctgctgcgaccggggcggttcgat
gagttgatctatgtccccgtgccggaccaggccgggcgcaagcgcatattgtccatccat
acgggcaagatgccgctggccgacgacgtcgatctggacatgctggccgagcgcaccgaa
cgcttcaccggcgccgatctggaggatctggtccgccgggcggggctggtcgcgctgcgc
cagtcgctctcggtcgacaaggtgacgcaggcccatttcgaagcggcgctggaggatacc
cgcgcctccgtcacgccggaaatggagcgcgaatatgagcagatccaggcgacgctcaag
cagagtgtgatgcaggtcgatcccatcggcttcgtcgcgcccggcatgctgcgggggcgc
ggcaaggaatga
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