Sphingobium sp. JS3065: NUH86_15455
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Entry
NUH86_15455 CDS
T10812
Name
(GenBank) MBL fold metallo-hydrolase
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
spjs Sphingobium sp. JS3065
Pathway
spjs03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spjs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NUH86_15455
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spjs03019
]
NUH86_15455
Messenger RNA biogenesis [BR:
spjs03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
NUH86_15455
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Lactamase_B_2
Lactamase_B
RMMBL
Motif
Other DBs
NCBI-ProteinID:
UZW54857
LinkDB
All DBs
Position
1:complement(3165429..3166670)
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AA seq
413 aa
AA seq
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MLEVIVHRGTRAIGGSCIELVASGGERLILDAGRPLDAPREASGLLPQTLDRYGPATVLF
SHAHMDHWGLIDELPAHWPLWTGEKAAELMRLTSGLFGTPLSRSISTWRARSCPLALGAF
SVTPFLTDHSAADAYMLLIEAEGRRILYSGDFRCHGRKAALVEAMIANPPRDVDALIIEG
TNLGTHKPVVTEAELEQDFTQLAQEVQGHIFVNWSAQNLDRTVTLFRAAKRTGRSLVVDL
YGADVLQRIAPGTGIPFPGDPRFPELQVIITGSGKRLYARQGRDDWVDALARKPYATSRK
RLSGGRAIVMTRDSMVAEFARGGLGFTERDAYVFSNWRGYLDEAAGWGRARQAGAKALHL
HTSGHASPSDIARFAKAVNPRALVPVHGLSWDAPGIDLPPIQRLADGEHWLVP
NT seq
1242 nt
NT seq
+upstream
nt +downstream
nt
atgcttgaggtgattgtccatcgcggcacacgcgcgatcggcggctcgtgcatcgaactc
gtcgcctcaggaggcgagcgcttgatcctggatgccggccggccgctcgacgcaccgcgc
gaggcgagcggcctcctaccccagacactcgatcgctacggtcccgccaccgttctgttc
agccacgcgcacatggatcactggggcctgatcgacgaactgcccgcgcattggcccctt
tggaccggtgaaaaagcagcggagttgatgcggcttacttctggtctgttcgggacgccg
ctttcccgttcgatctccacgtggcgggctaggtcatgtcctcttgccctcggcgcattc
tcggtgacacctttcctcaccgaccatagcgccgctgacgcatacatgctcctgatcgaa
gcagagggccgccgcatactctattcaggagattttcgctgccacgggcgtaaggccgca
ctcgttgaggcgatgatcgcaaatccgccccgagatgtggacgcactgatcatcgaaggc
acgaacctgggaacccacaagcctgtcgtcaccgaggcagagctggaacaggattttacc
cagcttgctcaggaggtgcagggacacatcttcgtaaactggtccgcacagaatctcgac
cgaacagtcacattgttccgcgccgcgaaacgcaccgggcgttccctggtggtggacctc
tatggcgcagacgtactgcaacggattgcacctggcacggggatccccttccccggcgat
ccgcgattccccgagttgcaggtaatcattaccggctcaggaaaacgcctctatgcaagg
caaggtcgcgatgactgggtcgacgctcttgctcggaaaccatatgccacctcccgcaag
cgtctatcaggcggtcgcgcaatagttatgacgcgggactccatggtggcggagttcgcg
cgcggcggcctcggcttcacagagcgcgatgcatacgtcttctctaactggcgcggctac
ttggatgaagccgcgggttggggtcgtgcccggcaggccggtgcgaaggcactgcacctc
cacaccagcggccacgccagcccttccgacatcgcgcgctttgccaaagcggtaaacccg
cgcgccctggtcccagtccacggtttgtcatgggatgcacccggcatcgaccttccgcct
atccagcgccttgccgatggggaacactggctggtgccgtaa
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