Sphingobium sp. JS3065: NUH86_16400
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Entry
NUH86_16400 CDS
T10812
Name
(GenBank) FliA/WhiG family RNA polymerase sigma factor
KO
K02405
RNA polymerase sigma factor FliA
Organism
spjs Sphingobium sp. JS3065
Pathway
spjs02020
Two-component system
spjs02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
spjs00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
NUH86_16400
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
NUH86_16400
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
spjs03021
]
NUH86_16400
09183 Protein families: signaling and cellular processes
02035 Bacterial motility proteins [BR:
spjs02035
]
NUH86_16400
Transcription machinery [BR:
spjs03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
NUH86_16400
Bacterial motility proteins [BR:
spjs02035
]
Flagellar system
Flagellar assembly proteins
Stator
NUH86_16400
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r4
Sigma70_r2
Sigma70_r4_2
Sigma70_r3
Motif
Other DBs
NCBI-ProteinID:
UZW55031
LinkDB
All DBs
Position
1:3352792..3353529
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AA seq
245 aa
AA seq
DB search
MYMNRVVAGSDANTYGRTGNANSPEQLARRYMPLVRKTAWHVHGRVSSAIEIEDLLQIGM
VALVEAANGFEDRGLGFASYAQMRVRGAMIDHLRRHATMTRSAMAQRKQLAGIRNRLEQK
LGRVPLESEMSVEMGLDAAAYREVADSCEMVQHTSMDEVYSDQSMWFADVEDRADDVMER
ESLKGALAKCIGELPQREALVLQLYFVEELNLDEIGVTLDIGAARVCQIKKAALDKLREK
LRDWD
NT seq
738 nt
NT seq
+upstream
nt +downstream
nt
atgtatatgaacagggtcgtcgccggttccgatgccaacacctatggccgcaccggtaat
gccaattcccccgaacagctcgcgcgccgctatatgcccctggtgcgcaagaccgcctgg
catgtccatggccgcgtatcgagcgccatagagatcgaggatttgctccagatcggcatg
gtcgcgctggtcgaggcggccaatggcttcgaggatcgcggcctgggtttcgcctcctat
gcgcagatgcgcgtgcggggagcgatgatcgaccatctgcgccgccatgcgaccatgacg
cgatcagccatggcgcagcgcaagcagttggcgggcattcgcaaccggctggagcagaag
ctgggccgtgtgccgctggaatcggaaatgtccgtggagatggggctggacgccgccgcc
tatcgcgaagtggccgacagttgcgagatggtgcagcataccagcatggatgaggtctat
tccgaccagtccatgtggttcgccgatgtcgaggaccgcgccgacgatgtgatggagcgg
gagtcgctcaaaggcgcgctggccaaatgcatcggtgaattgccgcagcgcgaggctttg
gtgcttcagctttatttcgtcgaggaactcaatctcgacgaaatcggcgtgacgctggac
atcggcgcggcgcgggtctgccagatcaagaaggcggcgctggacaaattgcgcgagaag
ctgcgcgattgggattga
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