Sphingobium sp. JS3065: NUH86_19275
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Entry
NUH86_19275 CDS
T10812
Symbol
fdhF
Name
(GenBank) formate dehydrogenase subunit alpha
KO
K00123
formate dehydrogenase major subunit [EC:
1.17.1.9
]
Organism
spjs Sphingobium sp. JS3065
Pathway
spjs00630
Glyoxylate and dicarboxylate metabolism
spjs00680
Methane metabolism
spjs01100
Metabolic pathways
spjs01120
Microbial metabolism in diverse environments
spjs01200
Carbon metabolism
Brite
KEGG Orthology (KO) [BR:
spjs00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00630 Glyoxylate and dicarboxylate metabolism
NUH86_19275 (fdhF)
09102 Energy metabolism
00680 Methane metabolism
NUH86_19275 (fdhF)
Enzymes [BR:
spjs01000
]
1. Oxidoreductases
1.17 Acting on CH or CH2 groups
1.17.1 With NAD+ or NADP+ as acceptor
1.17.1.9 formate dehydrogenase
NUH86_19275 (fdhF)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Molybdopterin
Molydop_binding
Fer2_4
Molybdop_Fe4S4
NADH-G_4Fe-4S_3
Fer4_7
Fer4
Fer4_Nqo3
Fer4_21
Fer4_10
Fer4_9
Fer4_6
Fer4_8
Fer4_2
Fer4_15
Fer4_16
Fer4_4
Fer4_18
TPP_enzyme_M
Motif
Other DBs
NCBI-ProteinID:
UZW57710
LinkDB
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Position
2:complement(414867..417713)
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AA seq
948 aa
AA seq
DB search
MSYTRETDHGTPPAIATGKSVTLTIDGEAVTMPEGTSIMRAASLTGCSIPKLCATDNVES
FGSCRLCLVEVEGRNGYPASCTTPVAEGMVVRTQSERLKQLRRGVMELYISDHPLDCLTC
PANGDCELQEQAGAVGLRDVRYGYDGATNMGQAKDQSNPYFDFDPSKCIVCSRCVRACDE
VQGTFALTIEGRGFDSKVSPSQGQDFLSSECVSCGACVQACPTATLTEKKVVEVGTPDRS
VVTTCAYCGVGCTFRAEMRGEELVRMVPWKEGKANHGHSCVKGRFAWGYAQHRDRILKPM
IRASVDQPWREVSWEEAIAHTASEFQRIQAKYGTRSIGGITSSRCTNEETFLVQKLIRQG
FGNNNVDTCARVCHSPTGYGLKTTFGTSAGTQDFDSVGQADVILVIGANPTDGHPVFASR
MKKRLRQGAKLIVIDPRRIDLVKSPHVEAAHHLPLRPGTNVAMLTALAHVIVTEKLYDDA
FIRDRCDWDEFAEWADFVSEPQRSPEAVEPLTGVKAEEVRAAARLYATGGNAAIYYGLGV
TEHSQGSSTVMAIANLAMATGNVGREGVGVNPLRGQNNVQGACDMGSFPHEFSGYRHVSD
DAVRGQFEQAWGVALDAEPGLRIPNMLDAATDGTFKGIFIQGEDILQSDPNTHHVAAGLA
AMECVVVQDLFLNETANYAHVFLPGSTFLEKDGTFTNAERRIQRVRKVMAPLNGYGDWEI
VQLVAQAMGLGWSYAHPSEIMDEIAALTPTFAGVHYDRLEAEGSLQWPANDAAPDGTPTM
HVGGFVRGKGKFVVTDYVPTDEKTGPRFPLLLTTGRILSQYNVGAQTRRTANEAWHPEDR
LEIHPTDAENRGIKDGDWVSLKSRAGETSLRALITERVAPGVVYTTFHHPDTQANVITTD
YSDWATNCPEYKVTAVQVMPSNGPSDWQRDYAEQARHSRRIAPLAAAE
NT seq
2847 nt
NT seq
+upstream
nt +downstream
nt
atgagctacacacgcgaaaccgatcatgggacgccgcccgccattgcgacgggcaagagc
gtgaccctcaccatcgacggcgaggcggtgaccatgccggaaggcacgtcgatcatgcgg
gcggcttcgctcaccggctgctcgatcccgaagctgtgcgcgaccgacaatgtggagagc
ttcggttcctgccgcctctgcctggtcgaggtggaggggcgcaatggctatcccgcctcc
tgcaccacgccggttgccgagggcatggtggtgcggacgcagagcgagcggctgaaacag
cttcggcgcggggtgatggaactttacatctccgaccatccgctcgactgtctgacctgc
ccggccaatggcgattgcgagttgcaggaacaggcgggcgcggtcggcttgcgggacgtg
cgctacggctatgacggcgcgaccaatatgggacaggcgaaggaccagtcgaacccctat
ttcgacttcgatcccagcaaatgcatcgtctgttcccgctgcgtgcgcgcctgcgacgag
gtgcagggcacgttcgcgctgaccatcgaggggcggggtttcgattcaaaggtctcgccg
tcgcagggccaggatttcctgtcgtccgaatgcgtgtcctgcggcgcctgcgtccaggcc
tgcccgaccgccaccttgaccgagaagaaggtggtggaagtcggcacgcccgaccggtcc
gtcgtcaccacctgcgcctattgcggcgtcggctgcaccttccgcgccgagatgcggggc
gaggagttggtgcgcatggtgccgtggaaggagggcaaggccaatcacgggcatagctgc
gtcaagggccgtttcgcctggggctatgcccagcatcgcgaccgcatcctgaagccgatg
atccgcgcttcggtggatcagccctggcgcgaggtgtcgtgggaggaggccatcgcccat
accgccagcgagttccagcgcatccaggcgaaatatggcacgcgcagcatcggcggcatc
acgtccagccgctgcaccaatgaggagacgttccttgtccagaagctgatccgccagggc
ttcggcaacaataatgtcgatacctgcgcgcgggtctgccattccccgacgggctatggg
ttgaagacgactttcggcacgtcggcgggcacgcaggatttcgacagcgtcggccaagcc
gatgtcatcctagtgatcggggcgaacccgaccgatggccatccggtcttcgccagccgg
atgaagaagcgcctccgccagggggctaagctgatcgtgatcgatccccggcggatcgat
ctggtgaagtcgccccatgtcgaggcggcgcatcatctgccgctgcggccgggcaccaat
gtcgccatgctgacggcgctggcgcatgtgatcgtgaccgagaagctctatgacgatgcc
ttcatccgggaccgttgcgattgggacgagttcgccgaatgggccgatttcgtgtccgaa
ccgcagcggtcccccgaagccgtcgagccgctgaccggcgtcaaggcggaagaggtgcgc
gccgcggcgcggctgtatgcgacgggcgggaacgccgccatctattacggcctgggcgtt
acagagcatagccaggggtcgtccaccgtgatggccatcgccaatctggccatggcgacc
ggcaatgtcggacgggagggtgtcggcgtgaaccccctgcgcggccagaataacgtgcag
ggcgcgtgcgacatgggcagcttcccgcatgaattttccggttatcgccatgtttccgac
gatgcggtgcgcggccagttcgaacaggcctggggcgtcgcgctggacgccgaaccgggg
ctgcgtatcccgaacatgctggacgcggcgacggacgggacattcaagggcatcttcatc
cagggcgaggatattcttcagtccgatcccaatacccatcatgtcgcggcggggctggcg
gcgatggaatgcgtggtggtgcaggatctgttccttaatgaaaccgccaattacgcccat
gtcttcctgccgggatcgaccttcctggagaaggacggtaccttcaccaatgccgaacgc
cgtatccagcgggtgcgcaaggtgatggcaccgctcaacggctatggcgattgggagatt
gttcagcttgtggcgcaggccatggggcttggctggtcctatgcgcatccgtccgagatc
atggatgagatcgccgcgctgacgccgactttcgcgggcgtgcattatgatcggctggag
gcggaaggatcgctgcaatggcccgccaatgacgcagcgccggacgggacgccgaccatg
catgtcggcggcttcgtgcggggcaagggcaagttcgtcgtcaccgactatgtgcccacg
gacgagaagaccggaccgcgtttcccgctattgctgacgaccgggcgcatccttagccaa
tataatgtcggcgcgcagacgcggcgcacggcgaatgaggcatggcatccggaggaccgg
ctggaaatccacccgactgacgctgaaaatcgcgggatcaaggatggcgactgggtctcg
ctcaagagccgggccggggaaaccagcctgcgcgccctgatcactgaaagggtggcgccc
ggcgtggtctacaccaccttccatcatcccgatacgcaggccaatgtcatcaccaccgac
tattcggactgggccaccaattgcccggaatataaggtgacggcggtgcaggtcatgcca
tccaacgggccgagcgactggcagcgcgattatgccgagcaggcccggcacagcaggcgg
attgcgccgctggcggcggccgaatag
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