Sphingobium sp. JS3065: NUH86_21470
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Entry
NUH86_21470 CDS
T10812
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
spjs Sphingobium sp. JS3065
Pathway
spjs03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
spjs00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
NUH86_21470 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
spjs03021
]
NUH86_21470 (rpoB)
03400 DNA repair and recombination proteins [BR:
spjs03400
]
NUH86_21470 (rpoB)
Enzymes [BR:
spjs01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
NUH86_21470 (rpoB)
Transcription machinery [BR:
spjs03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
NUH86_21470 (rpoB)
DNA repair and recombination proteins [BR:
spjs03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
NUH86_21470 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
RelB
Motif
Other DBs
NCBI-ProteinID:
UZW57289
LinkDB
All DBs
Position
2:complement(887169..891332)
Genome browser
AA seq
1387 aa
AA seq
DB search
MATKALPTISNTGAKKRIRKVFGDIHEVVQMPNLIEVQRESYEQFLRSDPKIGYVSGLEK
TLRSVFPIRDFAGTAEMDFVHYELEEPKYDVEECRQRGITYAAPMRVTLRLIVFEVDQDT
ETRSVLDIKEQDVYMGDMPLMTGNGTFIVNGTERVIVSQMHRSPGVLFDHDRGKTHSSGK
YLFAARVIPYRGSWLDFEFDAKDIVNVRIDRKRKLPVTALLYALGLTPEEMLGYFYNKVV
FVRGEGGWQIPFTAEAWRGQKPAFDIVDAKSGEVVFAAGHKISPRAANKAEKDGLETLLI
PTEEVYGRYSAYDLINESTGEIYIEAGDEVSPENLEKLDKAGIDRLELLDIDHVTTGPWI
RNTLKADKAEERDQALADIYRVMRPGEPPTKETAEALFAGLFFDPERYDLSAVGRVKLNM
RLDLDAEDTVTTLRTEDILAVVKELVNLKDGKGEIDDIDNLGNRRVRSVGELLENQYRVG
LLRMERAVKERMSSVDVSTVMPNDLINAKPAVAAVREFFGSSQLSQFMDQTNPLSEVTHK
RRVSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATFSRVNKYGFI
ETPYRKVIDGKVTNEVVYLSAMEEAKHTIAQANAELNADGTLAEDLISAREAGEFLMAPK
DHITLMDVSPKQLVSVAASLIPFLENDDANRALMGSNMQRQAVPLVSAEAPFVGTGMEGT
VARDSGAAITAKRPGIVDQVDATRIVIRATGDIAPGQSGVDIYTLQKFQRSNQDTCINQR
PLVKVGDLIEGGDVIADGPSTEFGELALGRNTLVAFMPWNGYNYEDSILISERIVKDDVF
TSIHIEEFEVMARDTKLGPEDITRDIPNVGEEALRNLDEAGIVYIGAEVEPGDILVGKIT
PKGESPMTPEEKLLRAIFGEKASDVRDTSLRLPPGVAGTVVEVRVFNRHGIDKDERAMAI
EREEIDRLAKDREDERAILNRATFNRLQEMLLGQTATAAPKGVRKGIEIDEALLGEVERH
EWWKFAVADDARQAGIEAVKAQYDEAVKLIVEKFEDRVDKLQRGDELPPGVLKMVKVFVA
VKRKLQPGDKMAGRHGNKGVISRILPIEDMPFLEDGTHVDIVLNPLGVPSRMNVGQIFET
HLGWAARGLGQQLKHALEDWREANPNAQAGEMPDAVKTRLLETYGEHYADQINGRTAEQI
VDLAEHLARGVPMATPVFDGAREADVSAMLELAGLHSSGQSDLYDGRTGDRFDRKVTVGI
IYMLKLHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALQAYGAAYTLQE
MLTVKSDDVVGRTKVYEAIVKGDDTFEAGIPESFNVLVKEMRSLGLNVELAAMDEVEDDD
GFAQAAE
NT seq
4164 nt
NT seq
+upstream
nt +downstream
nt
atggcgaccaaagctctccccacgatcagcaataccggcgcgaagaagcgcatcaggaag
gtgttcggcgacatccacgaagtggtgcagatgccgaacctgatcgaggtccagcgggag
agctatgaacagttcctgcgctccgacccgaagatcggctatgtctccggcctggaaaag
actttgcgctcggtcttcccgatccgcgacttcgcgggcacggcggaaatggatttcgtc
cattacgagctggaagagccgaaatatgacgtcgaggaatgccgtcagcgcggcatcacc
tacgccgcgccgatgcgcgtcacgctgcgcctgatcgtgttcgaagtggaccaggacacc
gaaacccgctccgtcctcgatatcaaggagcaggatgtgtacatgggcgacatgccgctc
atgaccggcaacggcaccttcatcgtcaacggaaccgagcgcgtcatcgtgtcgcagatg
caccgttcgccgggcgtgctgttcgaccatgaccgtggcaagacccactcgtcgggcaaa
tatctgttcgccgcccgcgtcatcccctatcgcggttcctggctcgacttcgaattcgac
gccaaggacatcgtcaacgtccgcatcgaccgcaagcgcaagctgccggtcaccgcgttg
ctctatgccctcggcctgacgccggaggagatgctgggctatttctacaacaaggtggtc
ttcgtccgcggcgaaggcggctggcagatccccttcaccgccgaagcatggcgcggccag
aagcccgccttcgacatcgtcgatgccaagtcgggcgaagtcgtgttcgccgccggtcac
aagatttcgccccgcgccgccaacaaggcggagaaggacggcctcgaaaccctgctgatc
ccgaccgaggaagtctatggccgctacagcgcctatgacctcatcaacgagagcaccggc
gaaatctatatcgaggccggcgacgaagtgtcgcctgaaaatctcgaaaagctggacaag
gcgggcatcgaccgcctcgaactgctggacatcgaccatgtcaccaccggtccctggatc
cgcaacacgctgaaggccgacaaggccgaggaacgcgaccaggcgctggccgacatttat
cgcgtgatgcgccccggcgagccgccgacgaaggaaaccgccgaagccctcttcgccggc
ctcttcttcgatccggaacgctatgacctgtcggccgtgggccgcgtcaagctcaacatg
cgcctcgatctggatgcagaggacaccgtgacgacgctgcggacggaggatatcctcgcc
gtggtcaaggaactggtgaacctgaaggacggcaagggcgagatcgacgatatcgacaat
ctcggcaaccgccgcgtccgctcggtgggcgagcttctggaaaaccagtatcgcgtcggc
ctcctccgcatggagcgcgccgtcaaggaacgcatgtcgtccgtcgacgtgtcgaccgtg
atgccgaacgacctcatcaacgcgaagcccgccgtggccgccgtgcgcgaattcttcggc
tcctcgcagctttcgcagttcatggaccagaccaacccgctgtcggaagtcacccacaag
cgccgcgtgtcggcgcttgggccgggcggtctgacccgcgagcgcgccggtttcgaagtc
cgcgacgttcacccgacccattatggccgcatctgcccgatcgaaacgccggaaggcccg
aacatcggtttgatcaactcgctggccaccttcagccgcgtgaacaaatatggcttcatc
gaaacgccttatcgcaaggtgatcgacggcaaggtgaccaatgaggtcgtctatctgtcc
gcgatggaagaagccaagcacaccatcgcgcaggcgaacgccgaactgaacgccgacggc
acgctggccgaagacctgatctccgcgcgtgaagcgggcgaattcctgatggcgcccaag
gaccatatcacgctgatggacgtcagtcccaagcagctggtgtcggtcgcggcctcgctc
attccgttcctggaaaatgacgacgccaaccgcgcgctcatgggatcgaacatgcaacgc
caggccgtgccgctggtcagcgcagaggcgccgttcgtcggcaccggcatggaaggcacg
gtcgcgcgggattccggcgcggccatcaccgccaagcgtccgggcatcgtcgatcaggtc
gacgcgacccgcatcgtgatccgcgccaccggcgacatcgcgccgggccagtcgggcgtc
gacatctacacgctccagaagttccagcgttcgaaccaggacacctgcatcaaccagcgt
ccgctggtgaaggtgggcgacctgatcgagggcggcgacgtgatcgccgacggtccgtcg
accgagttcggcgaactggcgctgggccgcaacacgctggtcgcgttcatgccctggaac
ggctacaactatgaagactccatcctgatctccgagcggatcgtgaaggatgacgtcttc
acctcgatccatatcgaggagttcgaggtcatggcccgcgacaccaagctggggccggaa
gacatcacccgcgacatcccgaacgtcggcgaagaagcgctgcgcaacctcgacgaggcg
ggcatcgtctatatcggcgcggaagtggagccgggcgatatcctggtcggcaagatcacc
cccaagggtgaatcgccgatgaccccggaagaaaagctgctccgcgccatcttcggcgaa
aaggcgagcgacgtgcgcgacacatccctgcgtctgccgccgggcgtagccggtacggtc
gtggaagtccgcgtgttcaaccgccacggcatcgacaaggacgaacgcgccatggcgatc
gagcgggaggaaatcgaccgcctcgccaaggaccgcgaggacgaacgcgccatcctcaac
cgcgccaccttcaaccgcctccaggaaatgctgctgggccagaccgccacggcggcgccc
aagggcgtgcgcaagggcattgaaatcgacgaagccctgctgggcgaggtcgagcgtcat
gaatggtggaagttcgcggtcgcggacgacgcccgccaagccggcatcgaagcggtcaag
gcgcaatatgacgaagcggtgaagctgatcgtcgagaagttcgaggatcgcgtcgacaag
ctgcaacgcggcgacgaactgccgccgggcgtgctcaagatggtcaaggtcttcgtcgcg
gtgaagcgcaagctgcaaccgggtgacaagatggccggccgtcacggcaacaagggtgtg
atctcgcgcatcctgccgatcgaggacatgccgttcctggaggacggcacccatgtcgac
atcgtgctgaacccgctgggcgtgccgtcgcgcatgaacgtcggtcagatcttcgaaacc
catcttggctgggccgcccgcggcctcggccagcagctcaagcatgcgctggaggattgg
cgcgaagccaatccgaacgcgcaggccggtgagatgccggatgcggtcaagacccgcctg
ctggaaacttatggcgagcattatgccgaccagatcaacggccgcaccgccgaacagatc
gtcgacttggccgaacatcttgcacgcggcgtgccgatggcgaccccggtgttcgacggc
gcccgcgaagccgacgtgtcggcgatgctggaactggcgggcctgcactcgtcgggtcag
agcgatctgtacgatggccgcaccggcgaccgtttcgaccgcaaggtgactgtcggcatc
atctacatgctgaaactgcaccatctggtcgacgacaagatccacgcccgttccatcggc
ccctacagcctggtcacccagcagccgctgggcggcaaggcgcagttcggcggccagcgc
ttcggtgaaatggaggtgtgggcgctccaggcctatggcgccgcctataccttgcaggaa
atgctgacggtgaagtcggacgacgtggtcggccgcaccaaggtctacgaagcgatcgtc
aagggcgacgacacgttcgaggccggtattcccgaaagcttcaacgtgctggtcaaggaa
atgcgctcgctgggcctcaacgtcgaactcgccgcgatggacgaggtcgaggacgacgac
ggcttcgcgcaggcggcggaataa
DBGET
integrated database retrieval system
