Sphingomonas sp. KC8: KC8_01275
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Entry
KC8_01275 CDS
T04987
Name
(GenBank) helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
spkc
Sphingomonas sp. KC8
Pathway
spkc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spkc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KC8_01275
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spkc03019
]
KC8_01275
03009 Ribosome biogenesis [BR:
spkc03009
]
KC8_01275
Enzymes [BR:
spkc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
KC8_01275
Messenger RNA biogenesis [BR:
spkc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
KC8_01275
Ribosome biogenesis [BR:
spkc03009
]
Prokaryotic type
rRNA helicases
KC8_01275
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
AAA_22
nSTAND_NTPase5
CMS1
Pro_Al_protease
Motif
Other DBs
NCBI-ProteinID:
ARS25928
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All DBs
Position
252795..254531
Genome browser
AA seq
578 aa
AA seq
DB search
MPFSRLTPLLAEALSERGYAAPTPVQAAVLEEGADNRDLIVSAQTGSGKTVAFGLAIAKQ
LLEEDGRVGRVQAPLALAIAPTRELALQVSRELMWLYGKAGARIVSCVGGMDPSRERRNL
SHGAHIVVGTPGRLRDHLERGALDLSGLKVAVLDEADEMLDMGFREDLEEILDATPDNRR
TLLFSATMPKPIVALAKRYQRDALRISTVGEDRGHGDISYQAVTVAPSDIEGAVVNLLRF
HEPDTAMLFCATRDAVRHLHASLVERGFDAVALSGEHSQNERNHALQALRDRRARVCVAT
DVAARGIDLPTLSLVVHVELPRDAEALQHRSGRTGRAGKKGTAVLIVPYQRRRRVEGMLR
GARIQAEWVSPPTAEAIRNADRERLLATLSAPVEIEDEDRALAVRLMAELSAEDIAAMLV
RSHRARLPAAEDLIEQGASPAPRERLEGPRPGFEDTIWFRMDVGRRHNADPRWLLPLLCR
RGHITKQDIGAIRIAADETMFEIPRHAAARFVAAVKRTAGGDPNGEDGIRIEPVQGAPRE
QQRQNRRAGPGGPGGAAAPRHHAKPFRGPPRGGPSRGR
NT seq
1737 nt
NT seq
+upstream
nt +downstream
nt
atgcctttcagtagattgaccccgcttcttgccgaagcactatccgaacgcggctatgcc
gcccctacacccgtccaggccgccgtcctggaagagggcgcggataaccgcgaccttatc
gtttccgcccagaccggttcgggcaagaccgtggccttcggcctcgcgatcgccaagcag
ttgctggaagaagatggccgcgttggccgtgtccaggcgccgctggcgcttgccatcgcg
ccgacccgcgaactggccctgcaggtcagccgcgaactgatgtggctgtacggcaaggcc
ggcgcgcgcatcgtttcgtgcgttggcgggatggacccgtcgcgcgagcggcgcaacctg
tcgcacggcgcgcacatcgtcgtcggcacgccgggccgcctgcgcgatcatctcgaacgc
ggcgcgctcgacctgagcggcctgaaggtcgcggtgctcgacgaagccgacgagatgctc
gacatgggtttccgcgaggatctggaagaaattctggatgcgacgccggataatcgccgc
acgctgctgttttcggcgacgatgcccaagccgatcgtggcgctagccaagcggtatcaa
cgcgatgcgctgcgtatctcgaccgtgggtgaagatcgcggccatggcgatatttcctat
caggcggtgacggtggccccgtcagatatcgaaggcgcggtggtgaacctgctgcgtttc
cacgaacccgacaccgcgatgctgttctgcgcgacgcgcgatgcggtgcgccacctgcac
gccagccttgtcgagcgcgggttcgacgcggtggcgctgtcgggcgagcatagccagaat
gaacgcaaccatgcgttgcaggcgctgcgcgatcgccgcgcccgcgtgtgcgtggcaacc
gacgtggccgcgcgcgggatcgatctgccgacgctgtcgctggtcgtccatgtcgaactg
ccgcgcgatgccgaagcgttgcagcaccgttcgggccgcaccggccgcgcgggcaagaag
ggcaccgccgtcctgatcgtgccctatcagcgccgccgccgggttgaaggcatgttgcgc
ggcgcgcggatccaggccgaatgggtgtcgccgcccactgccgaggcgattcgcaacgcc
gatcgcgaacggctgcttgcgacattgtccgcccccgtcgagatcgaggatgaagatcgc
gcgctggcggtgcggctgatggccgaactgagcgctgaggatatcgccgcgatgctggtg
cgcagccaccgcgcgcgtttgccggccgccgaagacctgatcgagcagggcgcatcgccc
gccccgcgcgaacggctggaagggccgcgtccgggctttgaagacacgatctggttccgc
atggatgtcggccggcggcacaatgccgatccgcgctggctgctgcctttgctgtgccgt
cgcgggcacatcaccaagcaggatatcggcgcgatccgcatcgccgcggacgagacgatg
ttcgaaatcccgcgccacgccgccgctcgcttcgttgccgcggtcaagcgcaccgccggt
ggtgatcccaatggcgaggatggcatccgtatcgagccggtgcagggtgcaccacgcgaa
cagcagcgccagaaccggcgtgctggcccgggtggtcccggtggcgccgcggcgccacgg
catcatgccaagccgtttcgcggaccgccgcgtggtgggccgtcgcgcggtcgctga
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