Sphingomonas sp. KC8: KC8_04135
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Entry
KC8_04135 CDS
T04987
Name
(GenBank) beta-lactamase domain-containing protein
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
spkc
Sphingomonas sp. KC8
Pathway
spkc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spkc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KC8_04135
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spkc03019
]
KC8_04135
Messenger RNA biogenesis [BR:
spkc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
KC8_04135
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
Lactamase_B_2
RNase_J_C
Lactamase_B
RMMBL
Anti-Pycsar_Apyc1
Xan_ur_permease
Motif
Other DBs
NCBI-ProteinID:
ARS26480
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Position
complement(859005..860585)
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AA seq
526 aa
AA seq
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MNVNLYGTQGKWVMVDLGLTFADSSYPGVDLILPDLSFIEERAKDLLGIVLTHGHEDHIG
AIPYLAADLGVPLYATPFTAGLIRGKLDEEGLGNKVKLHVIDQEGSFRLGPFGFTYVPLA
HSIPEGNALLIETPHGRIFHTGDWKLDDEPLLGTPSTAAELEAIGDEGVLALVCDSTNVF
NDDASGSEAAVREGLDGVIAAARGRVLVTTFASNAARVQTLGQVALDTGRQLCVAGRSLD
RIIKVAKACGYLKDFPATIDFDAAMRLPPSEVMIIATGGQGESRAALARIAFDSHQIKLS
EGDTVVFSSKQIPGNEIAIGRIQNRLAERGVLMVTDRQAHVHVSGHPGRPELELMYKWIR
PDIILPVHGEMRHMAEQARFAASCGVPRGIVQQNGQVLRLAPNGPALVGHERVGRLILDG
DVILPADGSTINERRRISQYGVIAVTVAIDARGRVSGEPAIMLQGIPVEEDRDDFLVEAR
DAAADAANDGSKDEAKLREAIRLAVRRRAAQWTGKKPIVDVSIIRV
NT seq
1581 nt
NT seq
+upstream
nt +downstream
nt
atgaacgtcaacctctacggcacgcaaggcaaatgggtgatggtcgatctcggcctgact
ttcgccgattccagttatccgggcgtcgacctgattctgccggacctctcttttatcgag
gaacgggccaaggatctgctcggcatcgtgctgactcacgggcatgaggatcatatcggt
gcgatcccctatctcgcagcggaccttggcgtaccgctgtacgcgacgccgttcacggcg
ggcctgatccgcggcaagcttgacgaagagggactgggcaacaaggtaaagctgcacgtt
atcgaccaggaaggcagtttccgccttgggccgttcggcttcacctatgtgccgctggcc
cattcgatccccgagggcaatgcgctgctgatcgagacaccgcacgggcgcatttttcac
accggcgactggaagctggatgatgagccgctgctgggcacgccatcgaccgccgccgaa
ctggaagcgatcggcgatgaaggcgtgctcgcgctcgtctgcgattcgaccaatgtgttc
aacgacgatgcgtcgggatccgaggccgccgtccgcgaagggctggacggggtgatcgcg
gccgcgcgtggccgggttctcgtgaccacattcgcgtcgaacgcggcgcgggtgcagacg
ctgggccaagtggcgctggacactggacgacagctttgcgttgccgggcgttcgctggat
cgcatcatcaaggttgccaaggcgtgcggctatctgaaggattttcccgcgaccatcgat
ttcgatgcagcgatgcgcctgccgccatcggaggtgatgatcatcgcgaccggcgggcag
ggcgaatcgcgcgccgcgcttgcccggatcgcgttcgacagccaccagatcaagctgtcg
gaaggggacaccgtagtgttctcgtccaagcagattccgggcaatgaaatcgcgatcggc
cgcatccagaaccgcctggccgaacgcggtgtgctgatggttaccgaccggcaggcgcat
gtgcatgtatccggccatccgggccggcccgaactggagttgatgtacaagtggattcgt
cccgacatcatcctgccggttcatggcgagatgcggcacatggccgaacaggcgcggttt
gcggcctcctgtggcgttccgcgcggcattgtccagcagaacggccaggtgctccgcctt
gcgccgaatgggccggcgctggttggccatgaacgggttggccggttgatccttgatggt
gacgtgatcctcccggctgacggatcgacgatcaacgagcgccgccgcatttcgcaatat
ggggtgattgcggtgacggtcgcgatcgacgccagggggcgggtgagcggcgaacccgcg
atcatgcttcagggtattccggtcgaggaagatcgcgacgattttcttgtcgaagcccgg
gatgctgcggcggatgccgcgaacgacggttccaaagacgaggccaagctgcgcgaggcg
atccgccttgcggtgcggcgtcgcgcagcgcaatggaccggtaaaaaaccgattgtcgac
gtttcgatcatccgggtctga
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