Sphingomonas sp. KC8: KC8_05595
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Entry
KC8_05595 CDS
T04987
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
spkc
Sphingomonas sp. KC8
Pathway
spkc03030
DNA replication
spkc03430
Mismatch repair
spkc03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
spkc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
KC8_05595
03430 Mismatch repair
KC8_05595
03440 Homologous recombination
KC8_05595
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
spkc03032
]
KC8_05595
03400 DNA repair and recombination proteins [BR:
spkc03400
]
KC8_05595
Enzymes [BR:
spkc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
KC8_05595
DNA replication proteins [BR:
spkc03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
KC8_05595
DNA repair and recombination proteins [BR:
spkc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
KC8_05595
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
DUF655
T2SSK
tRNA_anti-codon
COE1_HLH
Motif
Other DBs
NCBI-ProteinID:
ARS26761
LinkDB
All DBs
Position
complement(1171665..1175174)
Genome browser
AA seq
1169 aa
AA seq
DB search
MPHAGFVPLRIFSSFTMLEGAIEPKSIAKQCRKLAFPAAAITDRNGLYGAMAFSDGAKKD
GVQPIIGAMLGVQRPGTPEGKPIILDWLALYAQDEAGYDNLCALVSAAHLDRPGHEEAHV
PLERLEGFSDGLIALTASGEGAVTRLLADEQADAARAYLDRLERLFPGRLYIEVARRGDT
VEEAAEDALIELAYARNLPLVATNPACFAEPDFHAAHDTMLCIASSSYVDSGDRKRSSPE
AWIKPADEMMRLFEDLPEAIANTLVVAQRCGVAAPYRKPILPSLAGDRDGETEMLRADAR
KGLIARLQKYEPAASVDELEAKYPAYFERLTFETDIIVRMGFPGYFLIVADFIKWAKDHD
IPVGPGRGSGAGSVVAWALTITDLDPLRLGLLFERFLNPERVSMPDFDIDFCETRRGEVI
SYVQNKYGRDHVAQIITFGRLKARAVLKDTGRVLQMSYGQVDRLAKLVPNHPTDPWTLDR
ALNGVSELAAEYKADEQVTRLFDLAMKLEGLPRHSSTHAAGVVIGDRPLDQLVPLYRDPR
SDIPVTQFDMKFVEGAGLVKFDFLGLKTLSVLQKAVQFLAKRGVKVDLDQLAWDDPEVYN
LLQSGNTVGVFQLESEGMRRTLSAVRPTCFEDIIALVSLYRPGPMDNIPLFGDRKNGRAP
IEYPHPLLESILSETYGIFVYQEQVMQAAQILAGYSLGEADLLRRAMGKKIQAEMDAQRL
RFVEGCAAHAITPEKANELFDLIDKFAGYGFNKSHAAAYALVAYHTAWMKAHHKPEFYAA
SMCYDMALTDKLSIFVDDMRRMGVPCLPPDINASEAEYSVEDGAVRYALGALKGVGEKAM
EQLVAERTRAGRFKSLDDFADRVDPKLLNRRQLESLAAAGAFDAIASERAGVHAAAETIL
AHASTVAAARDSGQGGLFGDASVGAAPIRLSDKAVWTIAERMAAEKEAFGFYFSAHPVDR
FRHLAAANRAKSYAELLVMPVAEPQRSSEGRRMPTPTVTVAALIEDARWRTSARGNRYMM
ATCSDASGQFIATCFEEQASEEIEKAARSGECALLTVELDRRPGEDTPRITIRSLVPFEG
LAGKTRLCLDIETAEPMVLKALADLVLQERGGRGELRLRARTPEGGVAHVLLGRDFMLDA
ELVARIERVPGIERVELGAVELPKLSMAS
NT seq
3510 nt
NT seq
+upstream
nt +downstream
nt
atgcctcacgccggttttgtcccacttcgcattttttcgtccttcaccatgctggaaggt
gcaatcgagccgaaatcgattgccaagcaatgccgcaaactggccttccccgccgcggcc
atcaccgatcgcaatggcctatacggcgcaatggctttttcggatggcgccaagaaggat
ggggttcagccgattatcggcgccatgttgggcgtgcagcggccgggaacgccggaaggc
aagccgatcatcctcgattggctggcgctttatgcgcaggatgaggctggctatgataat
ctgtgcgcgcttgtgtcggccgcccatctcgatcggccgggccacgaggaagcgcatgtg
ccgcttgagcgactggagggcttcagcgatggcttgatcgcgctcacggcgagcggcgag
ggggccgttacccggttgctggccgatgagcaggcggatgcggcccgggcctatctcgat
cggctggaacggttgttccccgggcgcctttatattgaggtcgcgcgtcgcggcgacact
gtcgaggaggcagccgaggacgcgctgatcgaactggcctatgcccgaaatctgcctctg
gtggcgacgaatccggcctgttttgccgaaccggattttcatgccgcgcacgatacgatg
ctgtgcattgccagttcgtcctacgtcgatagcggcgatcgcaagcgatcatcccccgag
gcgtggatcaaaccggctgatgagatgatgcgcctgttcgaggatctgccggaggcgata
gccaacactctggtggtggcgcagcgttgcggcgtcgccgcaccctatcgcaaaccgatc
ctgcccagccttgcgggggatcgtgatggtgaaacggaaatgctgcgtgcggatgcgcgc
aaaggcctgatcgcgcggctccaaaaatatgaacccgctgccagcgtcgatgaactggag
gcgaaatatccggcgtatttcgaacgtctcaccttcgaaaccgacatcatcgtccgtatg
ggtttccccggctattttctgatcgtggccgatttcatcaaatgggcgaaagatcacgat
attcccgtggggccggggcgcggatcgggggcaggttccgtcgttgcatgggcgctgacc
atcaccgatctcgatccgttgcggcttggcttgctgttcgaacgcttcctcaacccggaa
cgcgtgtcgatgcccgatttcgacatcgatttctgcgaaacccggcgcggcgaggtgatc
agctacgtccagaacaaatatggccgggatcatgtggcccagatcatcacgttcgggcgg
ttgaaagctcgcgccgtgctgaaggacactggtcgtgttctccagatgagttatggacag
gttgatcgtttagccaaattggttccaaatcacccgaccgacccctggacgctggaccgc
gcgctgaatggcgtatcggaactggccgctgaatataaagcggacgaacaggttacccgc
ctgttcgatctggcgatgaagctggaaggcttgccacgtcacagttcgacccacgcggca
ggggtggtcatcggcgatcgcccgctcgaccagctggtgccgctttaccgcgatccgcga
tccgacatccccgtcacccagttcgacatgaaatttgtcgaaggggcggggttggtgaag
tttgacttccttggcctgaagacgctgtcggttttgcaaaaggccgtgcagtttctggcc
aagcgcggtgtgaaggtcgatcttgatcaattggcgtgggatgatccggaggtctataac
ctcctccaaagtggcaacacggttggcgtgtttcagctggaatccgaagggatgcgccgc
acgctttcggccgtgcggccaacctgcttcgaagatatcatcgcgctcgtctcgctttat
cggccaggcccgatggataatatcccgctgtttggcgaccgcaaaaatggccgtgcgccg
attgaatatccgcacccgttgctggaaagtatcctgagtgagacctatgggatcttcgtc
tatcaggaacaggtgatgcaggccgcgcagatactggccggctattcgctgggcgaagcc
gatctgttgcgccgtgcgatgggcaagaagatccaggcggaaatggacgcccagcgtctg
cgtttcgtggaagggtgcgccgcgcatgcgatcacgccggaaaaagccaatgaactgttc
gatttgatcgataagttcgccggctatggcttcaacaaaagtcacgctgcggcttacgcg
cttgtcgcctatcacaccgcctggatgaaggcccaccacaagcccgaattctatgctgcg
tcgatgtgctacgatatggcgttgaccgataagctgtcgatcttcgtcgatgatatgcgc
cgcatgggcgtgccgtgtctgccacccgatatcaatgccagcgaagccgaatattccgtc
gaagatggcgctgtgcgttatgcgctgggcgcgctgaagggggtcggcgagaaagcgatg
gagcaactggttgccgaacgcacgcgcgccggccgcttcaagtcgctcgatgatttcgcg
gaccgcgtggatcctaaactgttgaatcgccggcagcttgaaagcctggcggcggctggc
gctttcgatgcgattgcaagcgagcgcgccggagttcatgcggcggcggagaccattctg
gcgcacgcatccactgtcgctgccgctcgcgatagcgggcagggtggcctgttcggtgac
gccagcgtgggggcggcgccgatccgcctgtcggacaaggcggtttggacgattgccgag
cggatggcggcggagaaggaggcgttcggcttctatttttcggcgcacccggtggatcgg
ttccggcatctggcggcagccaaccgggcgaagtcctatgccgaactgctggtcatgccg
gtggcggaaccgcagcgttcgtcggaagggcggcggatgccgacgccgacggtgacggtg
gcggcgctgatcgaggacgcgcgctggcgcacgtcggcgcgcggcaaccgttacatgatg
gcgacctgttcggacgcatcggggcagttcatcgcgacctgttttgaagagcaggcgtcg
gaagagatcgagaaggctgcgcgttccggtgaatgcgcattgctgaccgtcgagcttgat
cggcggccgggcgaagacacgccacgcatcacgatccgttcgctggtcccgttcgaaggg
ctggccggcaagacgcggctttgccttgatatcgaaaccgccgagccgatggtgctgaag
gcgctggcggacctggttttgcaggagcgtggcgggcgcggggaattgcggctgcgggcg
cggacaccggagggcggtgtcgcccacgtcctgctgggccgcgacttcatgctggacgcc
gaactggtggcccggatcgagcgcgtgccggggatcgaacgcgtggagctgggcgcggtc
gaactgccgaagctatcgatggcgtcctga
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