Sphingomonas sp. KC8: KC8_11135
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Entry
KC8_11135 CDS
T04987
Name
(GenBank) polynucleotide phosphorylase/polyadenylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
spkc
Sphingomonas sp. KC8
Pathway
spkc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spkc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KC8_11135
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spkc03019
]
KC8_11135
03016 Transfer RNA biogenesis [BR:
spkc03016
]
KC8_11135
Enzymes [BR:
spkc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
KC8_11135
Messenger RNA biogenesis [BR:
spkc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
KC8_11135
Transfer RNA biogenesis [BR:
spkc03016
]
Prokaryotic type
tRNA degradation factors
KC8_11135
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
S1_RRP5
KH-I_KHDC4-BBP
OB_RRP5_4th
BioW
S1_2
Motif
Other DBs
NCBI-ProteinID:
ARS27842
UniProt:
A0A1X9YG87
LinkDB
All DBs
Position
complement(2330801..2333104)
Genome browser
AA seq
767 aa
AA seq
DB search
MFDIKKQEIQWGGKTLTLETGRVARQANGAVVATLGETVVLCAVTAARSVKEGQDFFPLT
VHYQEKYFSSGRIPGGFFKRERGATEKETLVSRLIDRPIRPLFPEGFYNEINVICQVLSY
DGENEPDILAMIAASAALTLSGVPFMGPIGAARVGYQDGEFILNPTDAQVAEGELDLVVA
GTHDAVMMVESEAKELSEEIMLGAVMFGHREMQKVLDAIIGLAEQAAKDPWDLAAQPDTS
AMKTKLKKLVGKEITAAYKLTNKSARSDALNEARAKAKVAFADASPQDQMVANKLVKKLE
AEIVRTAILKDGRRIDGRDTKTVRPIEATVHFLPRAHGSALFTRGETQTIATCTLGTKDA
EQMIDGLTGLRYENFMLHYNFPPYSVGEVGRFGAPGRREIGHGKLAWRALHGVLPTKEEF
PYTIRLTSDITESNGSSSMATVCGGSLALMDAGVPIKRPVSGIAMGLILEGKDFAVLSDI
LGDEDHLGDMDFKVAGTSEGITSLQMDIKIAGITEEIMKVALEQASGGRAHILGEMAKAL
DHTREELSAHAPRIETMNVPKEKIRDVIGTGGKVIREIVAQTGAKVDIEDDGTVKISSSD
PEKIEAAKNWIIGIVAEAEVGKIYTGKVVNLVDFGAFVNFMGGKDGLVHVSEIKNERVAK
VSDVLSEGQEVKVKVLEVDQRGKVRLSMRVVDQETGAELEDTRPAREPREGGDRGPRGDR
GDRGDRRREGGDRGPRRDGGRGPRREGGRDDGPAPEFAPAFLKRDDD
NT seq
2304 nt
NT seq
+upstream
nt +downstream
nt
atgttcgacatcaagaagcaggaaatccagtggggcggcaagacgctgaccctggaaacg
ggccgcgttgcccgtcaggccaacggcgcggttgtcgcgacgctcggcgaaaccgttgtg
ctttgcgccgtcacggctgcgcgcagcgtgaaggaagggcaggatttcttcccgctcacc
gtccattatcaggagaagtatttctcgtcgggtcgcatccccggcggcttcttcaagcgt
gaacgcggcgcgaccgaaaaggaaacgctggtttcccgcctgatcgatcgtccgatccgc
ccgctgttcccggaagggttctacaacgaaatcaacgtcatctgccaggtgctgagctat
gacggcgaaaacgagccggatattctggcgatgatcgcggcgtcggccgcgctcacgctg
tcgggcgtgccgttcatgggtccgatcggtgctgcgcgcgtcggctatcaggatggcgaa
ttcatcctgaacccgaccgatgcgcaggttgccgaaggtgaactcgatctcgtcgtcgcc
ggcacgcatgatgcggtgatgatggtcgaatccgaagccaaggagctttcggaagagatc
atgctcggcgccgtgatgttcggccatcgcgaaatgcagaaggtgctcgacgcgatcatc
ggtctggccgaacaggctgccaaggatccgtgggatctggccgctcagcccgacaccagc
gcgatgaagacgaagctgaagaagctcgtcggcaaggaaatcaccgcggcgtacaagctg
accaacaagtcggcccgttcggacgcgctgaacgaagcccgcgccaaggcgaaggttgcg
tttgccgatgccagcccgcaggaccagatggtcgccaacaagctggtcaagaagcttgag
gccgaaatcgtccgcaccgcgatcctcaaggatggccgccgcatcgacggccgcgacacg
aagaccgttcgcccgatcgaggcgaccgtgcacttcctgccgcgcgcccatggttcggcg
ctgttcacgcgcggcgaaacccagaccatcgccacctgcacccttggcaccaaggatgcc
gagcagatgatcgatgggctgaccggcctgcgctacgaaaacttcatgctgcactacaac
ttcccgccttattcggtcggcgaagtgggtcgtttcggtgcgcctggccgtcgcgaaatc
ggccatggcaagctggcgtggcgcgcattgcacggcgtgctgccgacgaaggaggaattc
ccctacacgatccgtctcacctcggacatcaccgagtcgaacgggtcgtcgtcgatggcc
accgtgtgcggcggcagcctcgcgctcatggatgccggcgtgccgatcaagcgcccggtt
tcgggcatcgcgatgggcctgatcctcgaaggcaaggatttcgcggttctcagcgacatc
ctgggtgacgaagatcatctcggcgacatggatttcaaggtggccggtacatcggaaggc
atcaccagcctgcagatggacatcaagatcgccgggatcaccgaagagatcatgaaggtc
gcgctggaacaggccagcggcggtcgtgcacacatcctgggcgaaatggccaaggcgctc
gatcacacccgtgaagaactgtcggcccatgcgccgcgcatcgaaacgatgaacgtcccc
aaggaaaagatccgcgacgtcatcggcaccggcggcaaggtgatccgcgagatcgtcgcc
cagaccggcgcgaaggtcgacatcgaagacgacggcacggtcaagatcagctcgtccgat
ccggaaaagatcgaagccgccaagaactggatcatcggcatcgtcgccgaggccgaagtc
ggcaagatctacaccggcaaggtcgtcaacctcgtcgatttcggcgcgttcgtgaatttc
atgggcggcaaggatgggctcgtccacgtctccgaaatcaagaatgagcgcgtggccaag
gtgtccgacgtcctgtccgaagggcaggaagtgaaggtcaaggtgctggaagtcgatcag
cgcggcaaggttcgcctgtcgatgcgcgtcgtcgatcaggaaaccggcgccgagctggaa
gatacccgcccggcgcgtgaaccgcgcgaaggcggcgatcgtggcccgcgcggcgaccgt
ggtgatcgcggcgaccgtcgccgtgagggtggtgatcgcggcccgcgtcgcgatggcggc
cgtggcccccgtcgtgaaggcggccgggatgacggccccgcgccggaattcgcgcctgcg
ttcctgaagcgcgacgacgattga
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