Sphingomonas sp. KC8: KC8_11925
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Entry
KC8_11925 CDS
T04987
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
spkc
Sphingomonas sp. KC8
Pathway
spkc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spkc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KC8_11925
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spkc03019
]
KC8_11925
03009 Ribosome biogenesis [BR:
spkc03009
]
KC8_11925
Enzymes [BR:
spkc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
KC8_11925
Messenger RNA biogenesis [BR:
spkc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
KC8_11925
Ribosome biogenesis [BR:
spkc03009
]
Prokaryotic type
rRNA processing factors
KC8_11925
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
ARS27990
UniProt:
A0A1X9YGZ8
LinkDB
All DBs
Position
complement(2491649..2494345)
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AA seq
898 aa
AA seq
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MTMRMLIDARHREETRVAVVKGNRIEEFDFESAERKQLKGNIYLAKVTRVEPSLQAAFVD
YGGNRHGFLAFSEIHPDYYQIPKEDREALLREEAEHAAEEEALRQREDADHDHHDDDDHH
DDDHHDDDHHDDGEHGEGEEGEAVPRRRPTSAGGADGDAVEALRTKRMNLRRRYKIQDVI
RRRQVLLVQVVKEERGNKGAALTSYLSLAGRYCVLMPNTAHGGGISRKISNAADRKRLKS
IMAELDLPKTMGCIVRTAGLQRTKTEIKRDFDYLARLWDEIRENTLQSEAPALVYGDSDL
IKRAIRDIYNRDIDEVIVEGEEGYRQARSFMKLLMPSHTKKIAAYNDAVPLFQRFGVEDQ
LAAMYQPIVQLKSGGYLVINPTEALVSIDINSGRSTREHNIEQTAVSTNLEAANEIARQL
RLRDMAGLVVIDFIDMENNSNNRKVEKAMKEALKNDRARIQVGRISSFGLFEMSRQRLRT
GVLEASTRQCPHCEGTGLVRTASSAGLSALRMLEDEAARGRGSRLVLRASQEAAFYVLNR
KREEISEIEERYGVLIEILSDGSLEGARMTVESSGPPPAYAPRLPAPIAMEPEDDDILDI
EDEEEEEEVVEAETGEREEREGEDRSRRRRRRRRRGGRREEGEGASQDEQQGDEAEEGVA
GDEQDEEADGEAGRDGEADGEADAGERGDGRRRRGRRGRRGGRRRNGEEGVNGDSAAQSE
PAVGAVVEAADTQAVVEVAVPAASDEEEAPAKPRARRRPRARKEAEPAVAETVAVAEVAP
EPEPVAVTAEEAPAEKPKRTRRKAAPKAETEAKPKAAPKTRAKAKAAAPVAAEAAEEGAP
PAKPARRTRAKAAAAPAETDVAEAVVEPVAEPATAETADAAEGNTGPRRGWWQRTFGA
NT seq
2697 nt
NT seq
+upstream
nt +downstream
nt
atgaccatgcgcatgctgatcgacgcgcgccaccgggaagaaacccgggtggccgtcgtc
aagggaaaccgcatcgaggaatttgatttcgaatccgctgagcgcaagcagctcaagggt
aatatctatctcgccaaggtgacgcgcgttgagccgtcgctgcaggcggcgttcgtcgat
tatggcggcaaccgccacggcttcctcgcattttcggaaatccacccggattattaccag
atccccaaggaggatcgcgaggcgctgctgcgcgaagaggccgagcacgccgccgaagaa
gaggcgctgcgccagcgcgaagacgccgatcacgaccatcatgacgacgacgatcatcat
gatgacgatcaccatgacgacgaccatcatgatgatggcgagcatggcgaaggcgaggaa
ggcgaagccgttccccgccgccggccgaccagcgcgggcggcgccgatggcgatgcggtg
gaggcgttgcgcaccaagcgcatgaacctgcgtcgccgttacaagattcaggacgtgatc
cgccgccggcaggtgctgctggtgcaggtcgtgaaggaagaacgcggcaacaagggtgct
gcgctgaccagctatctcagcctggccggccgttattgcgtgctgatgcccaataccgcc
catggcggcgggatcagccgcaagatttcgaacgcggccgatcgcaagcggctgaagtcg
atcatggcggaactggatctgccgaagacgatgggctgcatcgtccgcaccgcgggcctc
cagcgcaccaagaccgaaatcaagcgcgacttcgattatctcgcccggctgtgggacgag
attcgcgaaaacacgctgcaatcggaagcgccggcgctggtttatggcgatagcgacctg
atcaagcgcgcgatccgcgatatctataaccgcgacatcgacgaagtgatcgtcgagggc
gaggaaggctatcgtcaggcgcgcagcttcatgaagctcttgatgccgagccacaccaag
aagatcgcggcgtataacgacgcggtgccgctgttccagcggttcggggtcgaggatcag
cttgcggccatgtaccagccgatcgttcagctgaaatccggcggctatcttgtcatcaat
ccgaccgaggcgctggtgtcgatcgacatcaactcgggccggtcgacgcgcgaacataat
atcgagcagacggcggtcagcaccaatctggaagcggccaacgaaatcgcccgccagttg
cgcctgcgcgacatggccgggctggtcgtgatcgatttcatcgacatggagaacaactcc
aacaaccgtaaggttgaaaaggcgatgaaggaggcattgaaaaacgatcgcgcccgtatt
caggtcggccggatttcgagcttcggcctgttcgagatgagccgccagcgcctgcgcacc
ggcgtactggaagcatccacccgccagtgtccgcattgcgaaggcaccgggctggtccgc
accgcatcgtcggccggcctgtcggcgctgcgcatgctggaggacgaagctgcgcggggt
cgcggatcgcgcctggtgctgcgcgccagccaggaagcggctttctatgtgctcaaccgc
aagcgcgaggaaatcagcgagatcgaggaacgttatggcgtcctgatcgaaatcctgtcg
gatggatcgctggaaggcgcccggatgaccgtcgaatcgtctgggccgccgccggcctat
gcgccgcgcctgcctgccccgatcgcgatggaacccgaggatgacgacattctcgacatc
gaggatgaggaagaagaggaagaggtcgtcgaggctgaaaccggcgaacgcgaagagcgc
gaaggcgaggatcgtagccgtcgtcgccgccgtcgtcgtcgtcgcggtggccgtcgcgag
gaaggcgaaggcgcgtcgcaagacgaacagcagggcgacgaagccgaagaaggcgtggcc
ggcgacgagcaggacgaggaagccgacggcgaagccggtcgcgatggcgaggccgatggt
gaggcggacgccggagaacggggtgacgggcgccgtcgtcgcggtcgccggggacgccgt
ggtggccgccgccggaatggcgaagagggcgtgaacggtgacagtgccgcccaaagcgag
cctgccgtcggagcggtcgtcgaggccgccgatacgcaagccgttgtcgaagtggccgta
cctgcggcgtccgacgaggaagaggcacccgccaagccgcgtgcccgtcgtcgtccgcgg
gcgcgcaaggaggccgagccggccgtggcggagaccgtcgctgtcgccgaagtcgccccc
gaaccggaaccggttgccgtaacggctgaggaagcaccggctgaaaagcccaagcggaca
cggcgcaaggcggcccccaaggcggaaacggaagccaagcccaaggctgcgccgaagacc
cgggcgaaggcgaaagccgcagcgcctgtcgccgccgaggccgccgaggaaggtgcaccg
ccggccaagccggcccgccgcacccgcgccaaggccgccgcggcaccggctgaaaccgat
gtcgccgaagcggttgtcgaacctgttgccgaaccggcgacggcggagacggccgatgcg
gccgaaggcaataccgggccgcgtcgcggctggtggcagcggaccttcggggcgtga
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