Sphingomonas sp. KC8: KC8_12200
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Entry
KC8_12200 CDS
T04987
Name
(GenBank) 3'-5' exonuclease
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
spkc
Sphingomonas sp. KC8
Brite
KEGG Orthology (KO) [BR:
spkc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
spkc03016
]
KC8_12200
Enzymes [BR:
spkc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
KC8_12200
Transfer RNA biogenesis [BR:
spkc03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
KC8_12200
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GFIT
Motif
Pfam:
DNA_pol_A_exo1
RNase_H_2
Motif
Other DBs
NCBI-ProteinID:
ARS28044
UniProt:
A0A1X9YGU2
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All DBs
Position
2558984..2559688
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AA seq
234 aa
AA seq
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MAGSATRFAEPPPAASGIERTARPSYAERMTVHFHEEDLPADVLAPGPVAIDTETMGLIT
QRDRLCVVQISDGHGDEHLVRFSAGSSYAAPNLKAVLADPARLKIYHFARFDLAAMKYWL
GVMAEPVYCTKTASRLIRTYTDRHGLKELVREILGQEVSKQQQSSDWGAPELSDAQRDYA
ASDVRFLHQLRTKLDVRLAREGRTALAQACFDFLPHRAELDLAGWPEIDIFAHI
NT seq
705 nt
NT seq
+upstream
nt +downstream
nt
gtggcgggttcggcgacgcggttcgccgaaccgccgccagccgcatcgggcattgagcgg
acggcccggccgtcctatgcggaacggatgactgttcattttcacgaagaagatctcccg
gcggacgtgctcgcgccggggccggtggccatcgataccgaaacgatgggcctcatcacc
cagcgcgaccggttgtgcgtcgtccagatatcggatggccatggcgacgaacatctggtc
cgcttcagcgccggcagcagctatgccgcgcccaatctgaaggcggtgctggccgatccc
gcgcggctgaaaatctaccatttcgcgcgattcgatctggcggccatgaaatattggctc
ggggtgatggcggaaccggtttattgcaccaaaaccgcgtcgcgcctgatccgcacctac
accgatcgccacggcctgaaggaactggtccgcgaaatcctcggccaggaagtgtcgaaa
cagcagcaatcgtccgattggggcgcccccgaactgagcgacgcgcagcgcgattatgcc
gcgtcggacgtgcgcttcctccatcagctgcggacgaaactggatgtccgcctggcgcgt
gaagggcgcaccgcgctcgcccaggcctgtttcgattttctgccgcatcgtgccgaactc
gatctggccggctggccggaaatcgatatcttcgcgcatatctga
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