KEGG   Sphingomonas sp. KC8: KC8_12200
Entry
KC8_12200         CDS       T04987                                 
Name
(GenBank) 3'-5' exonuclease
  KO
K03684  ribonuclease D [EC:3.1.13.5]
Organism
spkc  Sphingomonas sp. KC8
Brite
KEGG Orthology (KO) [BR:spkc00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:spkc03016]
    KC8_12200
Enzymes [BR:spkc01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.5  ribonuclease D
     KC8_12200
Transfer RNA biogenesis [BR:spkc03016]
 Prokaryotic type
  3'processing and CCA adding factors
   3'processing factors
    KC8_12200
SSDB
Motif
Pfam: DNA_pol_A_exo1 RNase_H_2
Other DBs
NCBI-ProteinID: ARS28044
UniProt: A0A1X9YGU2
LinkDB
Position
2558984..2559688
AA seq 234 aa
MAGSATRFAEPPPAASGIERTARPSYAERMTVHFHEEDLPADVLAPGPVAIDTETMGLIT
QRDRLCVVQISDGHGDEHLVRFSAGSSYAAPNLKAVLADPARLKIYHFARFDLAAMKYWL
GVMAEPVYCTKTASRLIRTYTDRHGLKELVREILGQEVSKQQQSSDWGAPELSDAQRDYA
ASDVRFLHQLRTKLDVRLAREGRTALAQACFDFLPHRAELDLAGWPEIDIFAHI
NT seq 705 nt   +upstreamnt  +downstreamnt
gtggcgggttcggcgacgcggttcgccgaaccgccgccagccgcatcgggcattgagcgg
acggcccggccgtcctatgcggaacggatgactgttcattttcacgaagaagatctcccg
gcggacgtgctcgcgccggggccggtggccatcgataccgaaacgatgggcctcatcacc
cagcgcgaccggttgtgcgtcgtccagatatcggatggccatggcgacgaacatctggtc
cgcttcagcgccggcagcagctatgccgcgcccaatctgaaggcggtgctggccgatccc
gcgcggctgaaaatctaccatttcgcgcgattcgatctggcggccatgaaatattggctc
ggggtgatggcggaaccggtttattgcaccaaaaccgcgtcgcgcctgatccgcacctac
accgatcgccacggcctgaaggaactggtccgcgaaatcctcggccaggaagtgtcgaaa
cagcagcaatcgtccgattggggcgcccccgaactgagcgacgcgcagcgcgattatgcc
gcgtcggacgtgcgcttcctccatcagctgcggacgaaactggatgtccgcctggcgcgt
gaagggcgcaccgcgctcgcccaggcctgtttcgattttctgccgcatcgtgccgaactc
gatctggccggctggccggaaatcgatatcttcgcgcatatctga

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