Sphingomonas sp. KC8: KC8_14560
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Entry
KC8_14560 CDS
T04987
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
spkc
Sphingomonas sp. KC8
Pathway
spkc03410
Base excision repair
spkc03430
Mismatch repair
spkc03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
spkc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
KC8_14560
03430 Mismatch repair
KC8_14560
03440 Homologous recombination
KC8_14560
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
spkc03400
]
KC8_14560
DNA repair and recombination proteins [BR:
spkc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
KC8_14560
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
KC8_14560
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
KC8_14560
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
DHHA1
RecJ_OB
Motif
Other DBs
NCBI-ProteinID:
ARS28500
UniProt:
A0A1X9YIB4
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Position
3051129..3052895
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AA seq
588 aa
AA seq
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MTSVLNVTHSILGQPWRWRGSGTDGRDAHFQPDDLVAGLLMARGVPRDAVEAHRTPTIRG
FMPDPSIFRDMDRAAERLADAVMAGEPVTIFGDYDVDGATSAALLIRLLRDLGLGPQAYI
PDRLMEGYGPSGEALVRIAAGGARLIVTVDCGAQAFEALEMARAAKVDVIVVDHHKCAAA
LPPALALVNPNRLDEDEGAAHGHLAAVGVAFLLGAALLRVLRARGWFANRAEPKLIELLD
LVALGTVADVAALKGLNRAFVAQGLKVMAGRRNIGLVALTEAARLERAPTCTDLGFALGP
RINAGGRVGKSDLGVRLLTTTDPDEAREIAIELDRLNGERRAIEMLVTETAEAAAVGQAN
RAVAVVSGHGWHPGVIGIVASRLKERMGRPAIVIAVDEDGVGKGSGRSISGVDLGAAVLA
AKDMGLLVAGGGHAMAAGLTIDAAKIDALAEFLDDRLAADVARARDDRALLLDAVLAPGG
INPALVDALEAGGPYGAGWPAPRVVAGPVRVIKADIVGQGHVRAIVAGDDGRSIKTIAFR
QADTELGQALLGAGPDRRLWVAGRARIDDWGSRPAAEMHLEDAAWADR
NT seq
1767 nt
NT seq
+upstream
nt +downstream
nt
atgacctccgttctcaatgtcacccattcgatcctcggccagccatggcgttggcggggg
agcgggaccgacgggcgcgacgcgcatttccagccggacgatctggtcgccggcctgttg
atggcacggggcgtgccgcgcgacgcggtggaagcccaccgcacgcctacgattcgcggt
ttcatgcccgatccgtcgatctttcgcgatatggaccgcgccgccgaacggctggccgat
gcggtgatggcgggcgaacccgtcaccatctttggcgattatgacgtcgatggcgcgacg
tctgctgcgctgctgatccgcctgctgcgcgatctgggccttggcccgcaagcctatatc
cccgatcgcctgatggaaggctatggcccgtcgggcgaggcgctggtgcgcatcgccgcc
ggtggcgcgcgactgatcgtgacggtcgattgcggggcgcaggcgttcgaggcgctggaa
atggcgcgggccgccaaggtcgatgtgattgtggtcgatcaccacaaatgtgccgctgcc
ttgccgcccgcattggcgctggtcaatcccaaccggctggatgaggatgaaggcgcagcg
cacggccatcttgcggcagtcggggtcgcgttcctgctcggagcggcgttgctgcgcgtc
ctgcgcgcgcggggctggtttgccaaccgggcggaacccaagctgatcgaattgctcgat
ctggtcgccttgggcacggtggccgatgtcgcggcgctcaaggggttgaaccgggccttt
gtcgcacagggcctgaaggtgatggccgggcgccgcaacatcggccttgtcgcattgacg
gaggccgcgcggctggaacgggcacccacctgcaccgatcttggctttgcccttggcccg
cgcatcaatgcgggggggcgggtcggcaagtccgatctcggcgtgcgcctgctcaccacc
accgatcccgacgaagcgcgcgaaatcgccatcgaactcgatcggctgaacggtgaacgc
cgcgcgatcgagatgcttgtcactgaaaccgccgaggccgccgccgtcgggcaggccaac
cgggcggttgcggtggtatccggccatggctggcatcccggcgtgatcggcatcgttgcc
agccggctcaaggaacggatggggcgtcccgcgatcgtcatcgccgtggacgaagacggt
gtgggcaagggatcgggccggtcgatcagcggggtcgatctgggcgcggcggtgctggcg
gccaaggatatgggcctgctggtcgcgggcggcgggcacgcaatggcggcgggtcttacc
attgatgccgcgaagattgatgccctggcggaatttctcgatgaccggctggcggcggat
gtggcgcgcgcgcgcgacgaccgggccttgctgctggatgccgtgctggcgccgggcggg
atcaatccggcgctggtcgacgccctcgaagccggcgggccatatggcgccggctggccc
gccccgcgcgtggtggcggggccggtgcgggtgatcaaggcggatatcgtcgggcagggc
catgtgcgcgcgatcgtcgccggtgatgacgggcgttcgatcaagacgatcgcttttcgc
caggcggataccgaactgggccaggcgttgctcggcgcggggccggaccggcggttgtgg
gtggcgggccgcgccaggatcgacgattggggcagccgccctgcggccgaaatgcatctg
gaagatgccgcctgggccgacaggtga
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