Sphingomonas sp. KC8: KC8_16615
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Entry
KC8_16615 CDS
T04987
Name
(GenBank) outer membrane transport barrel
Organism
spkc
Sphingomonas sp. KC8
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PATR
Motif
Other DBs
NCBI-ProteinID:
ARS28892
UniProt:
A0A1X9YJ55
LinkDB
All DBs
Position
3445972..3453171
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AA seq
2399 aa
AA seq
DB search
MLLRSTALVLVSFSLATSALANGGAGGGVPAEGQSGGSGGVDNPIGVGGNGSSGSSSSYH
FGGGGGGGAGETVGGAGGGGHSNGAFGSSSGSGGSGGVHGLVNTGLPVAAAAGTNGGAGG
HGNGGMVNDGAGGGGGGAGGYGAVITGANVSGAIASTITGGHGGAGGNGAGRSVWPGQGG
SGGSGGIGLLFTDDSQLKALTIDAAIQGGDGGAAGGGGGASHGAGGVGIYGGNLDITLGA
GGAIAGGFAGGQTGNEAARGNAITFTGGSNRLAFDSAAPDIRGAIAIDGGTLTLDHSGNA
TLSNQITGIGALTKVGTNTLTLTGANTFSGVTTISAGTLQIGNGGTTGSITGNIVNNAGL
AFNRSDASSYGGAITGSGTLTKAGAGALVLTGANNFGGGTTISGGTLQIGAGGTTGSIAG
NIINNAALILQPQRRHDLWRRHHRQRRASPNPAQVRWSSLARTTLAAVPPSLTARCRSAA
AARQAASPGTLPTMAGSPSFAATPSPMAAISPAPARYPNPARAPSPSPGTNTYAGGTFIS
GGTLQIGDGGTTGSIVGDITNNAGLAFNRSDSIVYGDAITGSGTLIKSGAGALTLTGANS
HGGGTTISGGTLQIGNGGTTGSIAGNITNNAGLAFNRSDSIVYGGNISGTGALAKAGAGT
LTLTGTNNYSGATTITGGTLAVHDGSLGSGAVSISAAATLAFDNSGTSTVAGAISGIGTL
TKSGAGTLILTGNGTFAGTTTINGGTLSVNGALGNTAVTVNTGATLGGSGSIGGAVSILS
GATLSAGNSPGTLNVGALTLNAGSTSVFELNGPGVAGGTGAGGNDLVNVTNDLTLGGTLK
AQAGAAGYYRLFNYGGALAGGFATVDTAGSSFAVDQARIETFIPGQVNIAILGAGQTMQF
WDGVDATGNGTVDGGTGIWNGTGTNWTGQPGQAGINTQWGGSVGIFGGTAGGTVTVQGTQ
AFDTLQFSTNGYLLTGGVLRFDPATGSAATVQVDNSISATIASELIDGTSATALTKTGAG
RLILTGANTYTGGTTISGGTLQIGDGGTTGSIAGDIVNNATLVFNRSNSILYGESLTGSG
ALVKSGAGSLTLTGSATHSGGTTVSDGTLVIGSGGTNGSISGNIVNNADILINRSGMFSY
AGAMTGTGALTLMGSGDTIFTGHSAIDGATVVRRGTLMIADGGTFSNYRGNIDNFYSDSA
AALVTGAGSTWTNTFGLEIGRGDQGALTISNGGTVTVGDTASIGVSNGSNGAVLVNGTGS
SWRVDNLLYVGENGTGALTISGGGAVSTASTVLGNAASASGTVTVTGAGSAWTNSGVLTV
GNQGAGTLNIGAAAGELANIAGTVSASSINLANGINSRINFNHVGNGYVFASPITGTGSV
HQLSGTTIFTGTNSYTGGTTITGGTLQIGNGGTTGTLTGNVTNNGTLAFNRTDAATFGGA
LSGTGALHQYGSARLTLTGDSAGFAGATTVHVGTLRVDGALGGSLAIGNGASLEGAGHVG
AVDISGSGTLVGRAGDTLGIDSLVLGSDANVVVQLGTPSANALFDVTGDLVLDGTLNISD
AGGFGAGVYRLFDYGGTLTDNGLALGALPSGIAADDLVIQTAAPGRVNLVSSAGADLLFW
DGTNTALHDNGVVDGGAGIWTATGRMWTGAEGAVNGAIRPNPGFAVFQGNGGAVTLDDSA
GALSVTGMQFASDGYSLVGDALALAGSGGRTVIRVGDASAAGAGITTTIGSVLTGAGDLV
KADRGTLILTGANSYSGNTFVEGGTLIGNTTAIRGNIANAGTVIFDQAGDARFAGSIAGS
GGVDGTMIKRGAGSLTLTGTSSLDWSIKEGSLVTSTQAFTGDAAIAAGATLVFNQADAGS
YAGSLSGAGTLAIDGGHRLELTGNNAAFTGLFDVRGGRLIANGALGGTTRIGEGGFIGGN
GTLGHMVVGAGGIASPGNSIGTLTVNGDITFEAGSTYAVEVDAAGDASDRITATGRAILN
GGTVTHIGFDGNYRRDVAYTILTADGGVTGQFAGASSDYAFLDALLGYSANAVTLTLRRN
DIDFATIGRNGNQRSVANAVQALDSGNPLFDAVVMLGADQARTAFDSLSGEVHASLQSVL
VEDSRFIRSAALDRMRLAGAAADGDRGVAWWMQGIGNRGRLDGNGNAHRIRHDAAGVLMG
VDAIAAEKLQFGLYGGWQKGDVAVRAVSSEAEVDSYHLGLYAGADTGRFSILTGFAFGWH
DADTTRRISFTGLSETARASRRASTAQGFAEIGYRFDLAGTAIEPFANIAHVSLDSEATR
ERGDTAALRLAHMSMNTSFTTLGARLGQSFSLGGMQADLRAVAGWRHAFGDRTPEARLAF
TNSDFFKVGGTPVAKNALSADIGLSLALSKRARVDIAYAGDVAASTQNHSTKATFSLAF
NT seq
7200 nt
NT seq
+upstream
nt +downstream
nt
atgctgctccgctccaccgcgctcgtgctggtctcgttcagccttgccacgtccgcgctg
gcaaatggcggagctggcggtggtgtacctgctgaggggcaatcgggcggcagcggcggg
gtcgataaccccatcggggttggtggtaacggcagttcagggtctagcagtagctatcac
ttcggcggcggcggcggcggcggcgcgggtgagacagttggcggtgcgggtggcggaggc
cacagcaacggtgcttttggttcatccagcggaagcggcggaagcggcggtgttcatggc
ctcgtcaatacaggtcttccggtcgcggcggcggccggcacaaatggaggcgccgggggc
catggcaatggtggaatggtcaacgatggtgccggcggcggcggcggcggcgctggtggt
tacggtgccgtcatcacaggggccaatgtctccggcgctattgccagcactatcacgggc
ggccatggcggcgcgggtggaaatggggccggacggagtgtctggcccggccagggcggc
tcgggcggctcgggcggcatcggcctgcttttcaccgatgacagccagctcaaggcgctc
accattgacgcggcaattcagggcggcgatggcggcgcggcgggcggcggcggcggcgca
tcacatggagcgggcggcgtcggcatctatggcggcaatctggatatcacccttggcgcc
ggcggcgcgatcgcgggcggatttgccggcgggcaaacgggcaacgaagctgcgcgcggc
aatgcgatcaccttcaccggcggcagcaacaggctggctttcgacagcgcagcccccgat
atccgcggcgctatcgcgattgacggcggaacgctgaccctcgaccatagcggcaatgcc
accctgtccaaccagatcacgggcatcggcgcacttaccaaggttggcacgaacaccctc
acccttaccggcgcgaacactttttccggtgtcacgacgatcagcgcgggaacgctgcaa
atcggcaatggcggcacaaccggaagcattaccggcaatatcgtcaacaacgccgggctc
gccttcaatcgcagcgacgcgtcaagctatggcggcgccatcaccggcagcggcacgctc
accaaggccggtgcaggtgcgctggtcctcactggcgcgaacaactttggcggcggcacc
accatttccggcggcacgctgcagatcggggctggcggcacgacgggcagcattgcgggc
aacatcatcaacaatgccgcactgatccttcaaccgcagcgacgacatgatctatggcgg
cgccatcaccggcagcggcgcgcctcaccaaatccggcgcaggtgcgctggtcctcactg
gcgcgaacaactttagcggcggtaccaccatctctgacggcgcgctgcagatcggcggcg
gcggcacgacaggcagcatcgccggggacattaccaaccatggctggctcgccttctttc
gcagcaacgccatcgcctatggcggcgatatctccggcaccggcgcgctatccaaatccg
gcgcgggcaccctcaccctcaccgggcacgaacacctatgccggcggcacgttcatctcc
ggtggcacgctgcagatcggcgatggcggcacgacgggcagcatcgtgggggacatcacc
aacaatgccgggctggccttcaatcgcagcgacagcatcgtctatggcgacgccatcacc
ggcagcggcacgctcatcaagagcggcgcgggcgcgctcactctcaccggtgcgaacagc
catggcggcggcaccaccatttccggcggcacgctgcagatcggcaatggcggaacgacc
ggcagcattgcgggcaatatcaccaacaatgccgggctggccttcaatcgcagcgacagc
atcgtctatggcggtaacatctccggcaccggcgcgctcgccaaggccggcgcggggact
ctcaccctcaccggcaccaataactattcgggcgcgacgacgatcacgggtggcacattg
gcggtccatgacggttcgttgggcagcggcgccgtctcgatcagcgccgccgcaacactc
gccttcgacaatagcggcacgtcgaccgtcgctggcgcgatctccggcatcggcacgctc
acaaaatctggcgcgggcaccctcatcctcaccggcaacggcacctttgccggtacgacg
accatcaatggcggcacgctcagcgtcaacggggcgctgggtaacaccgccgtcacggtc
aataccggcgccacgcttggcggatcgggcagcatcggcggcgcggtcagcatcctgagc
ggcgcaacgctctccgccggcaacagcccgggcaccctgaatgtcggcgcgctcacgctg
aatgcaggatcgacctcggtcttcgaactcaatggcccgggtgtcgccggcggcacaggc
gcaggcggcaacgatctcgtcaacgtcacgaatgatctcacgcttggcggcacgctcaaa
gcacaggccggggccgcgggctattatcgcctgttcaactatggcggcgcgcttgcgggc
ggcttcgccacggttgataccgccggaagcagctttgcggtcgatcaggcgcggatcgag
acattcattcccggtcaggtgaacatcgccatcctcggcgcggggcagaccatgcagttc
tgggatggggtagacgccaccggcaacggcaccgtcgatggcggcaccggcatctggaac
ggcaccggcacgaactggaccggccagccgggtcaggcagggatcaacacccagtggggc
ggatcggtcggcatcttcggcggcacggcgggcggcactgtcaccgtgcagggcacgcag
gcgttcgatacgctgcaattctccaccaacggctacctcctgaccggcggtgtgctgcgc
ttcgatccggccacgggcagcgccgcgacagtccaggtcgataacagcatttccgcaacc
atcgcctccgaactgatcgatggcaccagcgccaccgcgctgaccaaaaccggcgcgggc
aggctgatcctcaccggtgcgaacacctataccggcggcaccaccatttccggcggcacg
ctgcagatcggtgacggtggcacaacgggcagcattgcgggcgacatcgtcaacaatgcc
accctggtcttcaatcgttccaattcgatcctctatggggaatccctcactggttcggga
gctttggtgaaatcgggcgcgggttcactgaccctgacgggcagcgccacccatagcggg
ggcaccaccgtatccgacggtactctggtgatcggcagcggcggaacgaacggaagcatt
tccggcaacatcgtcaacaatgccgatatcctcatcaatcgttccggcatgttcagctat
gccggcgcgatgacgggcaccggcgcgctcaccctgatgggcagcggggatacgatcttc
acgggccacagcgcgattgacggcgccaccgtcgtccgccgcggtacgctgatgatcgcc
gatggcggcaccttctccaattaccgcggcaatatcgataatttctattccgacagtgcc
gcagcgctcgtcaccggcgcgggatcgacctggacaaacaccttcggcctcgagatcggc
cggggcgatcagggcgcgctcaccatttccaatggcggcacggtcaccgtgggcgatacg
gcgtcaatcggtgtctcgaacggcagcaacggcgcggtcctcgtcaacggcaccggttcc
agctggcgtgtcgacaacctcctttacgtcggtgagaacggcacgggcgcgctcaccatt
tccggtggcggcgccgtttccacggcttccaccgtcctcggcaacgcggccagcgcatcg
ggcaccgtaaccgtgacgggcgccggatcggcatggacgaacagcggcgtcctcaccgtg
ggcaatcagggtgcgggaacgctcaatatcggtgcagccgctggtgaactcgccaatatc
gcgggcacggtttccgcaagctcgatcaatttggcgaacggcatcaacagccggatcaac
ttcaaccatgtcggtaacggttatgtcttcgcctcgccgatcacgggcaccggcagcgtc
catcaactcagcggcacgacgatcttcaccggcaccaacagctataccggcggcaccacc
atcaccggcggcacgctgcagatcggcaatggtggcaccacgggcacgctcacgggcaat
gtcaccaacaacggcacgctggccttcaaccgcaccgatgccgcaactttcggtggcgcg
ctttcgggcaccggcgcgctccatcaatatggttcggcccgcctgacgctgaccggtgat
agcgcgggctttgccggggccaccaccgtgcacgttggcacattgcgcgtcgatggtgcg
ctcggcggcagcctcgcgatcggcaacggcgcatcgctcgaaggtgcgggccatgtgggc
gccgtggatatctccggttccgggacgctggtcggccgcgcgggcgacacgctcggcatc
gacagccttgtgctcggcagcgatgccaacgtcgtcgtgcaattgggcacgccttcggcc
aatgcgttgttcgacgtgaccggcgacctcgtgctcgacggcacgctcaacatcagcgat
gctggcggctttggcgcgggcgtctaccgcctgttcgattatggcggcacgctcaccgac
aatggactcgcactgggcgccctgccttcgggcatcgcggcggacgacctggtgatccag
accgcggcgccaggccgggtcaacctcgtctcctcggctggcgctgacctgttgttctgg
gacggtacgaacaccgcgctccatgacaatggcgtggtcgatggtggtgcgggcatctgg
accgccaccggccgcatgtggacgggcgccgaaggcgcggtcaacggcgcgatcaggccc
aatccgggctttgccgtcttccagggcaatggcggcgcggtcacgcttgacgacagcgcg
ggcgcgctgtcggtcaccggaatgcagttcgcctccgacggctacagccttgtgggcgat
gccctcgcgctcgccggcagcggcggccgcacggtaattcgcgtcggtgacgcttcagcc
gcaggcgccggtatcaccacgacgatcggctcggtgctcaccggcgcgggcgatctggtc
aaggctgatcgcggcacgctcatcctcaccggcgccaacagctatagcggcaacaccttc
gtcgaaggcggcacgctcatcggcaacaccaccgcgatccgcggcaacatcgcgaatgcg
ggcacggtcatcttcgaccaggcaggcgatgcgcgctttgccggcagcatcgccggatcg
ggcggcgtcgacggcacgatgatcaagcgcggcgcgggcagcctcacgctcaccggcacc
tcttcgctcgactggtcgatcaaggaaggctcgctcgtcaccagcacgcaggccttcacc
ggtgatgccgcgattgcagcgggggccacgctggtcttcaatcaggccgatgcgggcagc
tacgccggcagcctcagcggcgcaggcacgctcgcgatcgacggcggccaccggctcgaa
ctgaccggcaacaatgcggccttcaccgggctgttcgatgtgcgcggcggccggctgatc
gccaatggtgcgctcggcggcaccacccgcatcggcgaaggcggctttatcggcggcaat
ggcacgctgggccacatggtcgtgggcgcgggcggcatcgcatcgccgggcaattcgatc
ggcacgctcaccgtcaatggcgatatcacctttgaggctggctcgacctatgcggtcgag
gtcgatgcggcgggtgacgccagcgaccgcatcaccgccaccggccgcgcgatcctgaat
ggcggcaccgtcacgcatatcggcttcgacggcaattatcggcgcgatgtggcctacacg
atcctcaccgccgatggcggcgttaccggccagttcgcgggcgccagctcggattatgcc
tttctcgacgccctgctcggctattctgccaatgccgtgacgctgacgctgcggcgcaac
gacatcgacttcgcaaccatcggccgcaacggcaaccagcgctccgtcgcaaacgcggtg
caggcgctcgattcggggaacccgctgttcgacgcggtcgtcatgctcggcgccgatcag
gcgcgcaccgcgttcgatagcctttcgggcgaggtccacgcctcgctccagtcggtgctg
gtcgaggacagccgtttcattcgttcggccgcgctcgatcgaatgcggcttgccggcgct
gcggcggatggcgatcgcggcgtcgcctggtggatgcagggcatcggcaaccggggccgt
ctggacggcaacggcaatgcgcaccggatcaggcatgatgccgcgggcgtgctgatgggc
gtcgatgcgatcgccgctgaaaaactccaattcggtctctatggcggctggcaaaagggc
gatgtggccgtccgcgcggttagttccgaggcggaggtcgacagctatcatctcggcctc
tacgcgggcgccgataccggccgtttcagcatcctgacgggtttcgcctttggctggcac
gatgccgataccacccggcggatcagcttcaccggcctcagtgaaaccgccagggccagc
cgccgtgcatcgaccgcgcaggggtttgcggagatcggctatcgcttcgatctcgcgggc
accgcaatcgagcccttcgccaatatcgcacatgtctcgctcgacagcgaagcaacgcgc
gagcgcggcgataccgcggcccttcgcctcgcgcacatgtcgatgaacacgagcttcacg
acgctcggcgcgcgcctcggtcagtcgttcagcctcggcggcatgcaggccgatctgcgc
gccgtcgccggctggcgccacgcctttggcgatcgcacccccgaagcccggctcgccttc
accaatagtgatttcttcaaggtcggcggcacgccggtcgcaaagaatgcgctctcggcc
gatatcggcctcagcctcgccctgtccaagcgcgcccgcgtcgatattgcctatgccggc
gacgtcgcagcgagcacccagaaccacagcacaaaggcaactttctcgctggcgttctga
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