Sphingomonas sp. KC8: KC8_17130
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Entry
KC8_17130 CDS
T04987
Name
(GenBank) hypothetical protein
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
spkc
Sphingomonas sp. KC8
Pathway
spkc00040
Pentose and glucuronate interconversions
spkc01100
Metabolic pathways
spkc02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
spkc00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
KC8_17130
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
KC8_17130
Enzymes [BR:
spkc01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
KC8_17130
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
TSP3_bac
Motif
Other DBs
NCBI-ProteinID:
ARS28995
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All DBs
Position
complement(3555629..3556996)
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AA seq
455 aa
AA seq
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MPLPVECTRRNSVCRTIWSMIAAICASACAPAPSATLAALNNQAFPGAAGYGANAIGGRG
GRIIQVVNLNDSGTGSLRACIDASGPRVCIFRVTGIIRFTTERPIIRNPYITIAGQTAPG
GGILLTHSGGDRGLTPIVVKNTHDVIIRHVRVRMDRPGSIRGSNSGFIIENSRNVILDHV
SGSWAVDENIGGYANNDNVTISWSIFAEGVPRHDKCALLSSDPTAPQHLSFTNNLCAHNG
DRNPDINFPPGSCVEILNNVLYNAQSEFTEVWASYGGTPVSIIGNWYRSGPDSRGEVAAI
TRQVIGATGIPKIYLADNRLDGALIPQSPNVAEVLVPTPPCPLTQAVVPAAQAYADTLAG
AGAFPRDAVDRRIVQEVRTRTGAIVRQAGMMPRLETGTPYADADNDGMSDLWERAVGLNP
LVNDAWGDHNGDGWSNLDEFLNHAHRTVLAGQPVQ
NT seq
1368 nt
NT seq
+upstream
nt +downstream
nt
atgccgctgccggtggaatgcacccgccgcaattctgtctgccgtaccatatggtccatg
attgccgccatctgcgccagtgcctgtgcaccggctccttcggcaacactcgccgcgctg
aacaatcaggcatttccgggggctgccggctatggcgccaatgcgatcggcggtcgtggc
ggccgcatcatccaggtcgtgaacctcaatgattcaggcacgggatcgctgcgcgcgtgc
atcgatgccagcggcccgcgcgtgtgcatattccgtgtaaccggcatcatccgcttcacc
accgaacggcccatcatccgcaatccctacatcaccatcgccgggcagaccgcacccggc
ggcggaattttactgacgcattccggcggagatcgcggactgacccccatcgtcgtcaag
aatacccatgacgtgatcatccgccatgttcgcgtgcggatggatcgccccggttccatt
cgcggcagcaacagcgggttcatcatcgaaaacagccggaacgtgatcctggatcatgtc
agcggatcatgggccgtcgacgaaaatatcggcggctatgccaataacgacaatgtgacc
atttcctggtcgattttcgccgagggcgttccccggcacgacaagtgcgccttgctgtcg
agcgatcccacggcgccgcagcatctgagcttcaccaacaatctgtgcgcccataatggc
gatcgcaatcccgatatcaacttcccaccgggatcgtgcgtcgaaatactcaacaacgtc
ctctacaatgcgcagtccgaatttaccgaagtctgggcaagctatggcggaacgcctgtc
agcatcatcgggaactggtatcgatcaggccccgattcccgtggcgaggtggccgcgatc
acgcggcaggtgatcggcgcgaccggcattccgaaaatctatctggccgacaaccggctg
gatggggcattgatcccccaatcccccaacgtcgcggaggtgctggtaccgacaccgccc
tgcccgctgacacaggccgtcgtgccggccgcgcaggcctatgccgatacgctggccggt
gccggtgccttcccgcgcgatgccgtcgaccgccgcatcgtacaagaagtgcggacacgc
accggcgcgatcgtccgacaggccggcatgatgccacgcctcgaaacaggaacgccctat
gcggacgcggacaatgacggcatgtccgatctgtgggaacgcgccgtcgggctgaacccg
ctcgtcaacgatgcctggggcgaccacaatggcgacggctggtccaacctcgacgaattt
ctgaaccatgcccatcgcaccgtccttgcgggacagcccgtgcagtaa
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