Sphingomonas sp. KC8: KC8_18115
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Entry
KC8_18115 CDS
T04987
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
spkc
Sphingomonas sp. KC8
Pathway
spkc03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
spkc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
KC8_18115
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
spkc03400
]
KC8_18115
Enzymes [BR:
spkc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
KC8_18115
DNA repair and recombination proteins [BR:
spkc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
KC8_18115
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
UB2H
Cas3-like_C_2
RecG_dom3_C
SecA_DEAD
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
ARS29190
UniProt:
A0A1X9YKF0
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All DBs
Position
complement(3739569..3743051)
Genome browser
AA seq
1160 aa
AA seq
DB search
MSDLQRILKADRPLTLAGAPAGFLPWLLADLARAAAGRKDGGRAVFVAPDDAAMRAIAEA
AAYFAPEIDILQFPAWDCLPYDRASPSLRATSQRLAALHALQRKADRPQLLLTTVNAAAQ
RTLTPFRIRQLVARLAPGERIDLESLALLLQANGYVRTDTVADAGEFAVRGGLVDLFPSG
EDLALRLDFFGDEIESVRRFDPADQRTVDRVDGFTLLPASEALLDEESIKRFRTRYREAF
GATATGDPLYQAISDGRRLAGMEHWLPFLEDRLATLFDHLGDDDVIVRDAGDEGSADARF
EAIADYHANRVRAQSSDPGSYRPIDPKTLYLTADEWQAVIADRPIHVATPFHEPESATVL
DFAIHGPRDFAPERTQNANVYEAVTEHLAALRRDGRKVVLASYSIGARERLSGLLADHGL
TSAAPAESWQEAQGLAARGHVALIVVPLDHGFTAPDIAVLTEQDMLGDRLVRRAKRKKSA
DAFLAEMATLSPGDLVVHAEHGIGRYEGLMSIPVGTSPHDCVALSYSGGDKLYVPVENID
VLSRYGSENEGVQLDKLGGVAWQARKARMKERIREIAGELIATAAARALRPADVAEPDAG
GYPAFVDRFPYQETDDQDRAISDVLDDLAKGTPMDRLVCGDVGFGKTEVALRAAFVAAMA
GMQVAVVVPTTLLARQHFTNFVERFQGFPINIGRLSRLVPAGETKKTKDGLADGSIDIVV
GTHAVIAKTVEFKRLGLVIVDEEQRFGVTHKERLKTMKADVHVLTLTATPIPRTLQMAMS
GLRELSVIQTPPVDRLAVRTYVMPWDPVVLREALLREHYRGGQSFFVAPRIKDLPDIEEF
LRKEVPEIRHVAAHGQMSPTEVEERMSAFYDKKYDVLLSTTIVESGLDIPSANTLIIHRA
DQFGLAQLYQLRGRVGRAKTRAYAYFTTPATRTITEAATKRLHVLSDLDSLGAGFQLASH
DLDIRGAGNLLGDEQSGHIKEVGFELYQSMLEEAIMDAKAGGLREVAVSTRDLSPQINVD
APILIPEDYVPDLDLRMGLYRRMNELENPGEIESFAAELIDRFGKLPDATQNLLSVIQIK
LNCRKAHVAKLDAGPRGALVTFFNDSFPDPAGLIAYAQRLQGTAKLRPDNKLVITRAWPD
AKARLHGALQLSKGLAKIIG
NT seq
3483 nt
NT seq
+upstream
nt +downstream
nt
ttgtccgatctccagcgcatcctgaaggccgatcggccgctcacgctggcaggcgccccg
gccgggttcctgccctggctgctcgccgatctcgcccgcgccgccgccggccgcaaagat
ggcggccgcgccgtgttcgtggcgcccgacgacgccgcgatgcgcgcgatcgccgaggcc
gcggcctatttcgcgccggagatcgacatactgcaattcccggcatgggattgcctgcca
tatgaccgcgcatcgccgtcgctgcgcgcgacatcgcaacggctggcggcgctccacgcg
ctccagcgcaaggcggatcggccgcaactgctgctgaccacggtcaacgccgccgcccag
cgcaccttgacgccgtttcgcatccgccagctggttgcccgccttgcgccgggtgaacgg
atcgaccttgaatcgctggccttgctgttgcaggccaacggctatgtccgcaccgatacg
gtggccgacgccggcgaatttgcggtgcgcggcggcctcgtcgatctgttcccatcgggc
gaagatctggcgctgcgcctcgattttttcggtgacgagattgaaagcgtccgccggttc
gacccggccgaccagcgcaccgtcgatcgggtcgacggtttcaccttgctgcccgcatcc
gaagcattgctcgatgaggaaagcatcaagcggttccgcacgcgctatcgcgaggcgttt
ggcgccaccgcgaccggcgatccgctctatcaggcgatttccgatggccggcggctggcg
ggcatggaacattggctgccctttctggaagaccggctggccaccctgttcgatcatctg
ggcgacgacgatgtcatcgtccgcgatgcgggcgacgaaggatcggccgacgcccggttc
gaagcgatcgccgattatcacgccaatcgcgtgcgcgcccaatcgtccgatcccggcagc
tatcgcccgatcgaccccaagacgctctatctgacggccgacgaatggcaggccgtgatc
gccgaccgaccgatccacgtcgcaaccccgttccacgaaccggaaagcgccaccgtcctc
gatttcgcgatccacggcccgcgcgatttcgcacctgaacggacgcaaaacgccaacgtc
tacgaagcggtgaccgagcatctcgcagcccttcgccgcgatggtcgcaaggtggtgctc
gccagctactcgatcggtgcgcgcgaacgcctgagcgggctgctcgccgatcacgggctg
accagcgcggcgccggccgaaagctggcaagaagcacaggggctggccgcgcgcggccat
gtcgcgctgatcgtcgtcccgctcgatcacggcttcaccgcgcccgatatcgcggtgctg
accgaacaggacatgctgggcgaccggctggtgcgccgcgccaagcgcaagaaatcggcc
gacgccttcctcgccgaaatggcgacgctgtcgcccggcgatctcgtcgtccatgccgaa
catggcatcggccgatacgaagggctgatgtcgatcccggtcggcacgtccccgcatgat
tgcgtggccttgtcctattcgggcggcgacaaattatacgtgccggtcgaaaatatcgac
gtcctgtcgcgctacggctcggaaaacgagggcgtccagctcgacaaattgggcggggtc
gcctggcaggcgcgcaaggcgcggatgaaggaacgcatccgcgaaatcgcgggtgaactg
atcgccaccgccgccgcccgcgcgctccggcccgccgatgtggccgaacccgatgccggc
ggctaccccgccttcgtcgatcgttttccctatcaggaaaccgacgatcaggatcgcgcg
atcagcgacgtgctggacgatctggccaaaggcacgccgatggaccggctggtctgcggc
gacgttggcttcggcaagaccgaagtggcgttgcgcgcggcgttcgtcgcggcgatggcg
ggcatgcaggttgccgtggtggtgccgacgacgttgctcgcccgccagcatttcaccaac
ttcgtcgaacggtttcagggctttccgatcaacatcggccgcctgtcgcgcctcgtgccc
gcgggcgaaaccaagaagaccaaggacgggctggcggacggatcgatcgatatcgtcgtc
ggcacgcatgcggtgatcgccaagacggtggagttcaagcggctcggccttgtcatcgtc
gatgaggaacagcgcttcggcgtcacccacaaggaacgactgaagacgatgaaggcggac
gtccatgtcctcaccctcaccgcgacgccgatcccgcgcaccttgcagatggcgatgtcg
ggcttgcgcgaactgtccgtcatccagaccccgccggtcgatcggctggcggtgcgcacc
tatgtgatgccgtgggatccggtggtgttgcgcgaagcgttgctgcgcgaacattatcgc
ggcgggcaaagcttcttcgttgccccgcggatcaaggacctgcccgatatcgaggagttt
ttgcgcaaggaagtccccgaaatccgccacgtcgcggcccacggccagatgagcccgacc
gaggtcgaggagcggatgtcggctttctacgacaagaaatatgatgtgctgctgtcgacc
acgatcgtcgaaagcgggctggatattccgagcgccaacacgctgatcatccaccgcgcg
gatcagttcggccttgcccagctctatcagctgcgcggccgcgtcggccgggcgaagacg
cgcgcttacgcctattttacgacgccggcgacacgcacgatcaccgaagcggcgacgaag
cgcctgcacgttctgtccgatctcgacagccttggcgcgggcttccagctggccagccac
gatctcgacattcgcggtgctggcaacctgctcggcgacgaacaatcggggcatatcaag
gaagtcgggttcgaactctaccagtcgatgctggaagaggcgatcatggacgccaaggcc
ggcggcctgcgcgaagtggcggtttccacccgcgatctgtcgccccagatcaatgtcgat
gcaccgatcctgattccggaagactatgtccccgatctcgatctgcggatgggcctgtac
cggcgcatgaacgaactggaaaatccgggcgagatcgaatccttcgcggcggaactgatc
gatcggttcggcaagctgcccgatgcgacgcagaatttgctgtcggtcatccagatcaag
ctcaactgtcgcaaggcgcatgttgccaagctggatgcggggccgcgcggcgcgctcgtc
accttcttcaacgatagtttccccgatccggccgggctgatcgcttatgcccagcggttg
caggggacagccaagttgcggcccgacaacaagctggtgattacgcgcgcctggcccgac
gccaaggcgcgtctccacggcgcgctgcaattgtccaaggggctggccaaaatcatcggc
tga
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