Sphingomonas sp. KC8: KC8_19185
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Entry
KC8_19185 CDS
T04987
Name
(GenBank) molecular chaperone GroEL
KO
K04077
chaperonin GroEL [EC:
5.6.1.7
]
Organism
spkc
Sphingomonas sp. KC8
Pathway
spkc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spkc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KC8_19185
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spkc03019
]
KC8_19185
03110 Chaperones and folding catalysts [BR:
spkc03110
]
KC8_19185
03029 Mitochondrial biogenesis [BR:
spkc03029
]
KC8_19185
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
spkc04147
]
KC8_19185
Enzymes [BR:
spkc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.1 Enzymes altering polypeptide conformation or assembly
5.6.1.7 chaperonin ATPase
KC8_19185
Messenger RNA biogenesis [BR:
spkc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
KC8_19185
Chaperones and folding catalysts [BR:
spkc03110
]
Heat shock proteins
HSP60 / Chaperonin
KC8_19185
Mitochondrial biogenesis [BR:
spkc03029
]
Mitochondrial protein import machinery
Matrix
Other matrix factors
KC8_19185
Exosome [BR:
spkc04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
KC8_19185
Exosomal proteins of other body fluids (saliva and urine)
KC8_19185
Exosomal proteins of breast cancer cells
KC8_19185
Exosomal proteins of colorectal cancer cells
KC8_19185
Exosomal proteins of bladder cancer cells
KC8_19185
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cpn60_TCP1
Motif
Other DBs
NCBI-ProteinID:
ARS29398
LinkDB
All DBs
Position
3944848..3946476
Genome browser
AA seq
542 aa
AA seq
DB search
MPAKDVKFAREAREGIVRGVDIIANAVRVTLGPKGRNVVIDKGYGAPRITKDGVTVAKEI
ELKDKFENMGAQMLRAVASRTHDHAGDGTTTATVLAQAIVREGMKSVSAGINPMDLKRGI
DLAVIKVVDDLKARSKPVANNEEIAQVGIVSANGDEIVGRRIAEAMEKVGKEGVITVEEA
SGVEFEFDVVDGMQFDRGYLSPYFITNSEKMTVELQDPYILICEKKLSNLQALLPILEAV
AQSGRPLFIIAEDIEGEALATLVVNKLRGGLKVAAVKAPGFGDRRKAMLEDIAILTAGQA
ISEELGTKLENVTLDMLGTAKRVTIDKDNTTIVDGAGSPDTIKGRVDVIHAQIENSTSDY
DKEKLQERLAKLAGGVAIIKVGGSTEVEVRERKDRVDDALHATRAAVEEGIVAGGGTALL
YASRTLDDLKGINDDQTRGIDIVRKALQAPLRQIVENAGHDGGVIAGRLIDGNDQNLGFN
AQTEQYEDLVRSGVIDPTKVVRSALQDAASVAGLLITTEAAVAECGDDKTLAPATYGGGM
AF
NT seq
1629 nt
NT seq
+upstream
nt +downstream
nt
atgccggccaaggatgtcaaattcgcccgcgaggcccgagagggcatcgtgcgtggtgtc
gatattatcgccaatgcggtccgtgtgaccctcggccccaagggccgcaatgtcgtcatc
gacaagggctacggcgctccgcgcatcaccaaggacggcgtcaccgtcgccaaggagatc
gaactcaaggacaagttcgagaatatgggtgcgcagatgctgcgtgctgtcgcttcgcgg
acgcacgaccatgccggcgacggcactacgactgcgaccgtgcttgcccaggcgatcgtg
cgcgagggcatgaaatccgtatcagccgggatcaacccgatggacctgaagcgcggcatc
gacctcgccgtcatcaaggttgtcgacgacctcaaggcacgctctaagcctgtcgccaac
aatgaggaaatcgcccaagtcggcatcgtttcggcgaatggcgacgagatcgttggccgc
aggatcgctgaagcgatggaaaaggtgggcaaggaaggcgtcatcaccgttgaggaagcc
agcggcgtggagttcgagttcgatgtggtcgatggcatgcagttcgatcgcggttatctc
agcccttacttcattaccaattccgagaagatgacggtcgaactacaggatccctacatc
ctgatctgcgagaagaagctctcaaacctccaggcgctgttgccgatcctcgaagcggtg
gcgcaatcgggccgtccgctgtttatcattgccgaggacatcgagggggaggcgctcgcg
acgctggtcgtcaacaagctgcgcggcggcctgaaggttgcggcggtcaaggcacccggc
ttcggtgatcgccgcaaggcgatgctggaagacatcgcgatcctgacggcaggccaggcc
atctcggaagagctgggcacaaaacttgagaatgtgaccctcgacatgctcggcaccgcc
aagcgcgtgaccatcgacaaggacaacaccaccatcgttgatggagccggctctccggat
acgatcaagggtcgggtcgatgtgatccatgcgcagatcgagaacagcaccagcgattat
gacaaggagaagctccaggagcgcttggccaagcttgctggtggcgtcgccatcatcaag
gtcggcggctcgaccgaggtcgaggtccgggagcgcaaggatcgcgtcgacgacgcactg
catgcaacccgtgcggcggtcgaggaaggcatcgtcgcgggtggaggcaccgcattgctc
tatgcgtccaggacgctcgacgacctcaaggggatcaacgacgatcagacgcgcggcatt
gatatcgtccgcaaggcactgcaggcaccgctccgccagatcgtcgaaaatgcggggcac
gatggcggcgtgatcgcgggtcggctgatcgacggcaacgaccagaatttgggcttcaac
gcccagaccgagcaatatgaggatctggtccgttcaggcgtgatcgatcccaccaaggtc
gtccgatccgcattgcaggatgcggcgtcagtcgcaggattgctgatcacgaccgaggcc
gcggtggctgaatgcggggacgacaagaccctggcgcccgccacctacggcggtggcatg
gccttctag
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