KEGG   Shewanella pealeana: Spea_0397
Entry
Spea_0397         CDS       T00606                                 
Name
(GenBank) transcription termination factor Rho
  KO
K03628  transcription termination factor Rho
Organism
spl  Shewanella pealeana
Pathway
spl03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:spl00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Spea_0397
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:spl03021]
    Spea_0397
   03019 Messenger RNA biogenesis [BR:spl03019]
    Spea_0397
Transcription machinery [BR:spl03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     Spea_0397
Messenger RNA biogenesis [BR:spl03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     Spea_0397
SSDB
Motif
Pfam: Rho_RNA_bind ATP-synt_ab Rho_N OB_RNB AAA_22 AAA NACHT AAA_25 Spore_III_AA S1CSD-TOTE-2
Other DBs
NCBI-ProteinID: ABV85725
UniProt: A8GZI8
LinkDB
Position
complement(479324..480589)
AA seq 421 aa
MNLSELKDTSISDLVQLAQDMKLENMARARKQDIIFSILKAHAKSGEDIFGGGVLEILQD
GFGFLRSSDGSYLAGPDDIYVSPSQIRRFNMRTGDTIFGKIRPPKEGERYFALLKVTEVN
FDKPENSRNKILFENLTPLHAEERMRMERGNGSTEDITSRILDLCSPIGKGQRGLIVAPP
KAGKTLLLQTMAQSITYNNPEVVLMVLLIDERPEEVTEMQRMVKGEVIASTFDEPASRHV
QVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDANALHRPKRF
FGAARNIEHGGSLTIIATALVDTGSKMDEVIYEEFKGTGNQELHLSRKAAEKRVFPAIDF
NRSGTRREEKLTTPDELQKMWILRKILNPMDEVTGMEFLIDKLAMTKTNDEFFTAMKRAK
S
NT seq 1266 nt   +upstreamnt  +downstreamnt
atgaatttatcagaattaaaagacacctcgatttcagatttagtccagcttgctcaagac
atgaagctagaaaatatggctcgtgctcgtaagcaagacattattttctctatccttaag
gcccacgctaaaagcggtgaagatattttcggtggtggcgttttagagatcttacaagat
ggcttcggcttccttcgtagctctgatggttcatacttagcgggcccagatgatatctac
gtttcacctagccaaattcgacgctttaacatgcgcactggtgacacgattttcggtaaa
atccgaccaccaaaagaaggcgagcgttattttgcccttctaaaagtgaccgaagttaac
ttcgacaagcctgaaaactctcgcaacaagatcctatttgaaaacttaacacctctacat
gcagaagaacgtatgcgtatggaacgtggtaatggttcaactgaagacatcacttcacgt
attctggatttatgctcaccaattggtaaaggtcaacgtggtcttatcgttgcgccacca
aaagcgggtaaaaccttattgcttcaaactatggcgcaaagtatcacctacaacaatcca
gaagtggtgttgatggtactacttatcgacgaacgtcctgaagaagttaccgagatgcaa
cgtatggtaaaaggtgaagttattgcttcaactttcgacgagccagcaagccgtcacgta
caagttgcagaaatggtaattgaaaaggctaaacgtttagtagagcataagaaagacgtc
gtaatcttacttgattctattactcgtcttgctcgtgcatacaacactgttattccttca
tctggcaaggtgcttacaggtggtgttgacgctaacgcactacaccgtccaaagcgtttc
ttcggtgcagctcgtaacatcgaacatggtggtagcttaaccattatcgctactgcgctt
gttgatacaggctctaagatggacgaagtgatttacgaagaatttaaaggtactggtaac
caagaactacacctttctcgtaaagccgctgagaagcgagtgttccctgcaatcgacttt
aaccgctctggtacccgtcgtgaagagaagctgactacaccggatgaactacagaagatg
tggatcctacgtaagatccttaatccgatggatgaagtgacaggtatggaattccttatc
gacaagttggcaatgaccaagacaaacgatgagttcttcactgcgatgaagcgcgctaag
agctaa

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