Shewanella pealeana: Spea_0468
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Entry
Spea_0468 CDS
T00606
Name
(GenBank) DNA helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
spl
Shewanella pealeana
Pathway
spl03420
Nucleotide excision repair
spl03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
spl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Spea_0468
03430 Mismatch repair
Spea_0468
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
spl03400
]
Spea_0468
Enzymes [BR:
spl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Spea_0468
DNA repair and recombination proteins [BR:
spl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Spea_0468
MMR (mismatch excision repair)
Other MMR factors
Spea_0468
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PcrA_UvrD_tudor
AAA_30
ResIII
Motif
Other DBs
NCBI-ProteinID:
ABV85796
UniProt:
A8GZQ9
LinkDB
All DBs
Position
576841..579006
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AA seq
721 aa
AA seq
DB search
MDVSSLLDGLNDKQREAVGAPQSSMLVLAGAGSGKTRVLTHRIAWLMQVEQQSPYAILAV
TFTNKAAKEMRERVEKVAGGNMSRMWIGTFHGLAHRLLRTHYKDANLPESFQILDSDDQL
RLIKRILKSLNLDEKQYPPRQAQGYINGKKDLGLRPSHIDAGGFPIEQNLLKIYQIYQDS
CDRAGLVDFAEILLRAHELWLNKPHILDHYQDRFKHILVDEFQDTNAIQYAWIRVLAGST
ANVMIVGDDDQSIYGWRGAQVENLHKFLADFPAAQTIRLEQNYRSSGNILNASNELIANN
PDRMGKKLWTDDKDGEPIGLYCAFNEMDEARFIVGRITDWQDEGGKLEDCAILYRSNAQS
RVLEEALLHKGIAYRIYGGLRFFERQEIKDAMGYLRLINNKNDDAAFERVVNTPTRGIGD
RTLDIIRTTARQQEMTLWEASLRLLEEKVLNGRAANAVRGFMDLIVAMRMDTDEQSLHRM
TDHVIQTSGLKAMYEAEKSEKARARVENLEELVTAARSFVMPEEIEDMGELNAFLSHAAL
EAGEGQADEFTDAVQLMTLHSAKGLEFPMVFMAGVEEGLFPSQMAIDEGDRLDEERRLCY
VGMTRAMQKLYITYAESRRIYGRESFARPSRFVKEIPEQYVQEIRMRTQVSAPAVSSRFS
KQDNAFNDSGFKIGQRVMHPKFGEGTVTNYEGSGAQARIQVNFFDVGSKWLVIAYARLES
L
NT seq
2166 nt
NT seq
+upstream
nt +downstream
nt
atggacgtatcttctttactagacggcctaaacgacaagcagcgagaagctgttggtgca
ccgcaatccagcatgttggtattggcgggtgcgggtagtggcaaaacgcgggtgctcacc
cacagaattgcctggttgatgcaggttgaacagcaaagcccttatgcaattttagcggta
acctttaccaataaagcggcaaaagagatgcgtgagcgtgttgaaaaagttgctggtggc
aatatgagccgcatgtggatcggtactttccacggcttagcccaccgcttgctgcgtacc
cattataaagatgccaatctgcctgagagcttccagatcttagattcagacgatcaactg
cgtctgatcaaacgtattctaaaaagccttaacttggacgagaagcagtatccgccaaga
caagctcaaggctacatcaatggtaagaaagacttaggtctacgcccgtcgcatatcgat
gcgggcggcttcccgattgagcaaaatttactgaagatctatcagatctatcaagattca
tgcgatcgcgcaggtttagtcgattttgcggaaatcttactcagagcccatgagctttgg
ctcaacaagccgcatattctggatcattaccaagacaggtttaagcatattctggtagac
gagttccaagacactaacgccattcaatacgcatggatccgtgtacttgcgggttctact
gccaatgtgatgatagtcggtgatgacgaccagtctatctacggctggcgcggcgctcag
gtggagaacttgcataagttcttggccgacttcccagcggcgcaaactattcgtttggaa
cagaactatcgttcgagcggtaatattctaaatgcctcgaacgagctgattgccaataac
ccagatcgtatgggtaaaaaactttggaccgacgacaaagacggtgagccaattggcctt
tactgtgcctttaacgaaatggatgaggcgcgctttatcgttggccgcattaccgattgg
caagatgaggggggcaagttagaagattgcgccattctttatcgttccaacgctcagtcc
cgcgtactggaagaagccttattgcataaaggcatcgcttatcgtatctatggcggcctg
cgcttcttcgaacgccaagagattaaagacgccatgggttacctgcgacttatcaataac
aagaatgatgatgctgcctttgagcgtgtggtgaataccccaactcgtggtattggcgat
cgcactctagatatcattcgtaccactgcacgccagcaagagatgaccctgtgggaagcg
agtcttcgcttactggaggagaaggtccttaacggccgtgccgccaatgccgtacggggt
tttatggacttgattgtcgccatgagaatggacaccgacgagcaatctttgcaccgtatg
acagaccatgtgatccaaacatcgggtctaaaggcgatgtatgaggccgagaagagtgaa
aaggcccgtgcacgtgtagagaacttagaagaattagttacagctgctcgcagctttgtg
atgcctgaagagatcgaagacatgggcgagctcaatgccttcctgtctcacgcagcgcta
gaagcgggtgaaggccaggctgatgagtttaccgatgcggtgcagttaatgacactacac
tcggcaaagggtcttgagttcccaatggtgtttatggcgggtgtcgaagaaggcttgttc
ccgagccagatggctatcgatgaaggtgaccgtctcgatgaggagcgccgtctctgttat
gtgggtatgacccgtgccatgcagaagctgtatatcacctacgccgagtcgagacgcatt
tatggccgtgaaagcttcgcgagaccttcacgttttgtaaaggaaattcctgagcaatat
gtgcaggagattcgtatgcgtactcaggtttcagcgccagcagtcagcagtcgctttagt
aagcaagataatgccttcaatgattcaggctttaagattggtcagcgtgtgatgcaccct
aaatttggtgagggcactgtgaccaattatgaaggaagtggtgcacaggcgcggattcag
gttaactttttcgatgttggtagtaagtggttagtcatcgcttacgcgcgcttggaatcg
ttataa
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