Shewanella pealeana: Spea_0958
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Entry
Spea_0958 CDS
T00606
Name
(GenBank) RNA polymerase, sigma 70 subunit, RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
spl
Shewanella pealeana
Pathway
spl02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
spl00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
Spea_0958
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
spl03021
]
Spea_0958
Transcription machinery [BR:
spl03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
Spea_0958
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
DUF3391
PBP1_TM
Motif
Other DBs
NCBI-ProteinID:
ABV86285
UniProt:
A8H148
LinkDB
All DBs
Position
complement(1169239..1171089)
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AA seq
616 aa
AA seq
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MISMDHTPQSQLKLLLAKGKEQGYLTYAEVNDHLPADMVDSDQIEDIIQMINDMGIRVYE
QAPDADEIMMSEDSTDDDAAEEAAAALATVEAELGRTTDPVRMYMREMGTVELLTREGEI
VIAKRIEEGINTVQASVAEYPQAIAMILEQYDRYEAEEVRLSDIISGFVDPNAEDVAPTA
THVGSELSDDELDDEDDDDDDDDDDDEEEEGPKGPDPEEAKEKFTTLRLAHENALRIIAD
KGRGHPESTVALFEIGEIFKEFRLMPKQFDRLVKNMRSMMDKVRVQERLIMKLCVEQAKM
PKKNFVKVYTSNESSIEWFNDELASGKPYVEGLQMVEFDVQRCRAKLDAIEVETGLAIGA
IKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVD
KFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGRE
PSPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATG
ESLKNATHEVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRK
LRHPSRSEILKSFLDE
NT seq
1851 nt
NT seq
+upstream
nt +downstream
nt
atgatatctatggatcatactccgcagtcgcaacttaaattgttgctcgccaaaggtaaa
gagcaaggttacttaacctatgcagaagtgaacgatcacttacctgcagacatggtcgat
tctgaccagattgaagatattatccagatgatcaatgacatgggtattcgagtctatgaa
caggctccggatgctgatgaaatcatgatgtctgaagacagcaccgatgacgatgctgca
gaagaagccgctgctgcgcttgcaacagttgaagcagaattaggtcgtactactgaccca
gtgcgcatgtacatgcgtgaaatgggtacagttgaacttctaacacgtgaaggcgagatt
gttatcgctaagcgtatcgaagaaggtattaacacggttcaagcatctgttgcggaatat
ccgcaagcgattgcgatgatccttgaacaatacgatcgctacgaagctgaagaagttaga
ctttctgacatcatctctggatttgttgatccaaatgcagaagatgtcgcgccaacagct
actcatgttggttctgagttatctgatgatgaattggatgatgaagatgacgatgacgat
gatgacgatgacgatgacgaagaagaggaaggtccaaaaggtcctgatcctgaagaagct
aaagagaagtttacaacacttcgtctagcccatgaaaatgcattaagaattattgcagac
aaaggccgtggtcacccagagtcgaccgtagcactattcgaaattggcgagatcttcaaa
gagttccgtttgatgcctaagcagtttgaccgcttagttaagaacatgcgctctatgatg
gacaaagtccgtgttcaagaacgtttgatcatgaagctttgtgttgaacaagccaaaatg
ccgaagaagaacttcgtcaaagtttacactagcaatgaaagcagcatcgaatggttcaac
gatgaacttgcatcaggcaagccatatgtagaaggtctacaaatggttgagttcgatgta
caacgttgtcgtgcaaagcttgatgcaattgaagttgaaactggtctagctatcggtgca
atcaaagatattaaccgtcgtatgtcaatcggtgaagcgaaagctcgtcgtgcgaagaaa
gagatggttgaagcgaacttacgtctagtaatctctatcgctaaaaagtacaccaaccgt
ggtctacagttcttggatctaattcaagaaggtaacatcggtctgatgaaagcggtagat
aagttcgaataccgtcgtggttataagttctctacttatgcaacttggtggatccgtcag
gcgatcactcgttctattgctgaccaagcaagaacgatccgtattccagtgcatatgatt
gagactatcaacaagcttaaccgtatctctcgccaaatgttgcaagagatgggtcgtgaa
ccttctcctgaagagttggcagagcgcatgttaatgcctgaagataagatccgtaaggta
cttaagatcgctaaagagccgatctcaatggaaacaccaattggtgacgatgaagattcg
cacttaggtgatttcatcgaggatactaccctcgagctaccattggactctgcgacaggc
gaaagcttgaagaacgcaactcacgaagtactagcgggcctaacagctcgtgaagctaaa
gtactgcgtatgcgtttcggtatcgacatgaatactgaccacactctagaagaagtgggt
aagcagtttgacgtaacacgtgagcgtattcgtcagattgaagctaaagcgctacgtaag
ttgcgtcacccttctcgctctgagatcttaaagtcgttcctagacgaatag
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