Shewanella pealeana: Spea_2291
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Entry
Spea_2291 CDS
T00606
Name
(GenBank) excinuclease ABC, B subunit
KO
K03702
excinuclease ABC subunit B
Organism
spl
Shewanella pealeana
Pathway
spl03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
spl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Spea_2291
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
spl03400
]
Spea_2291
DNA repair and recombination proteins [BR:
spl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Spea_2291
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Spea_2291
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Helicase_C
UvrB_inter
UvrB_3rd
UvrB
ResIII
DEAD
AAA_16
AAA_30
AAA_22
DUF87
UB2H
P-loop_SecA
Kinesin
AAA_5
NPHP3_N
Motif
Other DBs
NCBI-ProteinID:
ABV87611
UniProt:
A8H4X4
LinkDB
All DBs
Position
complement(2775396..2777381)
Genome browser
AA seq
661 aa
AA seq
DB search
MSKNTFILHSNYTPSGDQPEAIARLVDGIDSGSSHQTLKGVTGSGKTFTVANIIHRLKRP
TIILAHNKTLAAQLYSEMRHFFPENAVEFFVSYYDYYQPEVYLPGSDRFIRKDSAINEHL
ERLRLSTTKALIERRDVIVVASVSSIYGLGDPDAYRSLQVKLWLGQEIDLDDLIQRLERL
QYTRCNRTINRATFLVREGVIDIFPADSEHQALTVEIEAGRVNQLYWIDAISGQQLETIA
EYCVSPKTLYSVSIEQVELACGQIMSDMEQQVAILNADNRLTEAARLYERTVSDLELLRL
QGYCPGIENYASYLNQRDPQLPPTTLFDYLPKDGLLFIDESHVMIPQISAMYKSDQSRKN
TLIDFGFRLPSARNNRPLSFTEFESIKPQTIFVSATPSNYELSKSKQQVFKQIIRPTGLL
DPEIEIRPSDNNLEDLVQEIALRLARNERTLVTTLTKKSAESLNDFLSAKGIKVSYLHSD
IKTNDRVEIIKALRVGEIDVLIGINLLREGLDIPEASLVAVLDADTAGFLRSEQALIQII
GRAARNENGKAILYADKVTTAMQSAIDESAERRGHQIIYNMANGIVPSSSKRRLDSGSQT
QVAVSHMDRAQFCENLSALCQQITAKEKELLLCVDEGEGGADQAKIIRQQLIALYRQFIF
M
NT seq
1986 nt
NT seq
+upstream
nt +downstream
nt
atgtctaaaaatacctttatcttacattcgaactatacgccttcaggcgatcagcctgaa
gccatcgctcgcttagtcgatgggattgatagtggaagcagccatcaaaccttaaaaggt
gttacgggttcgggtaaaaccttcactgtggccaatatcattcataggttaaaacggcca
acgattattctggctcataacaagacattagccgcgcagctatatagtgaaatgaggcat
tttttccctgaaaatgccgttgaattctttgtatcttattacgattattatcagcctgaa
gtgtaccttcccggtagcgatcgtttcattcgtaaagactcagccattaacgagcactta
gagcggctgcgattatcaaccactaaggccttgattgagcgtagagatgttatcgtcgtg
gcgtctgtctcgtcgatatatggtttaggagatcctgatgcctaccgttccttgcaagtt
aagctctggctaggacaagaaatagaccttgatgatttaatccagcggttggagcggttg
cagtacacgcgttgtaatcgcactatcaatcgggcgacgtttttagtacgtgagggagtg
attgatatctttcctgctgattccgagcatcaggcgctgacagttgaaattgaagctggc
cgagtcaatcaattgtattggattgatgccatcagtggccagcaactcgagacaatcgct
gaatattgtgtctcgccaaaaaccttgtattcggtatctatagagcaggtggaattggcc
tgcgggcagataatgagcgatatggagcaacaggtcgccatactcaatgcagataataga
ctgactgaggcggcgaggttatatgagcgcacagtgtcagatctcgagttgctgcgatta
cagggctattgtccaggtattgagaactatgcttcctatctaaatcaacgcgacccacag
ttaccgccaacaaccttgttcgactatctccctaaagatggcttactgtttattgacgag
tcacatgtgatgatcccgcagatatcggccatgtataagagtgatcagagccgtaagaac
actctaatcgattttgggtttcgtctcccttctgcccgtaacaaccgtcctttgagcttc
actgagtttgagagcattaaaccacaaaccatttttgtgtcagccactccgagcaactac
gagctatcaaaatcaaaacagcaggtatttaagcagattatacgtcctacaggtttactc
gatcctgaaattgaaattcgtccttctgacaataatcttgaggatctcgttcaagagata
gcccttagacttgcccgcaacgagcggacactggtgaccacgttaactaaaaaaagcgct
gaatcgttaaatgactttttgtctgccaaagggattaaagtcagctatttacattcagat
atcaaaaccaacgatagggtcgagatcataaaagctctgcgtgtgggagagattgatgtg
ctgataggcattaacctattgcgtgaaggtttagatattcctgaggcatccttggtggcg
gtactcgatgccgatacagccggtttcttacgttctgaacaggcgctgattcaaattatc
ggccgagctgcgcgtaacgagaacggcaaagcgattctatatgcagataaggtgacaact
gcgatgcaaagtgccatcgacgagtctgctgagcgacgaggccatcaaattatctataac
atggccaatggcatagtgcctagttcatctaagcgtagactcgactctggtagtcaaact
caggttgcagttagccacatggatagggcgcaattttgtgagaatttgtcagccctgtgt
cagcagatcacagccaaggagaaggagttactcctgtgtgtcgatgaaggtgaaggtggc
gcggatcaggctaagatcattcgacagcagcttattgcgctttatcgtcagtttatcttt
atgtaa
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