Shewanella pealeana: Spea_2420
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Entry
Spea_2420 CDS
T00606
Name
(GenBank) exodeoxyribonuclease V, beta subunit
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
spl
Shewanella pealeana
Pathway
spl03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
spl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
Spea_2420
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
spl03400
]
Spea_2420
Enzymes [BR:
spl01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
Spea_2420
DNA repair and recombination proteins [BR:
spl03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
Spea_2420
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_11
AAA_25
Motif
Other DBs
NCBI-ProteinID:
ABV87740
UniProt:
A8H5A3
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All DBs
Position
2954883..2958599
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AA seq
1238 aa
AA seq
DB search
MSDENRENQTVNMTTSASSQLSANIVTEALDTLTLPFGGSRLIEASAGTGKTFTIAGLYV
RLLLGHGIEAPLTCEQILVVTFTNAATGELRDRIRKKIQLAYRCFIGLEVDDELINSLYQ
ATPEASLPIARKRLDLALKSLDEAAIFTIHGFCQRILADMAFESSLLFESEFTLDDSEFL
HHAVRDFWRERCYPLTGCLADAIISKFSDPDTLSRQLRPLLGASSAVASPKPQAFEKLEA
ELSQSLSRFKLIWPREREQTETLLHALPLNGARFGKKADGYPKLAKMLDDLDNWVAFGQA
LPPAKVLEALSLNELKLNKGGEVPTAQQAPMLDHIERLAQLIANLIPSFLYCARDGIASR
FAKQKLERNLLTPDDLLLTLAKALNVSQDNRLASSIAQRFPVALIDEFQDTDPLQFEIFN
AIYQSSGSKSTAANGDKTPNDKLSLLMIGDPKQAIYAFRGADIHTYIQARAQTAKHYNLD
TNYRSNRQMVDAVNGIFNHRDDPFISQSIPFEPVKASSFADKKVLNERAADSSALRLRLL
SEEAEKGLNKTTARQLIADDVADEIARLLIDAQQNLCAIGTKPLRAKDIAILVRDRHEAN
VVRAALSERQIGSVFLSRDSVFNTLEARELALVLYAMADPKDERALRSALATSLLGYSAE
AIHSFNQDEDKRQTLLEQFAQLHQVWLKRGIMPALLTLASQTQIIERLLSGEEGDRRLTD
FRHLGELLQQKATELDGSSALINWYEQALIENLPNEEAQLRLESEQNLVQVVTIHKSKGL
EYPICFVPFVSLSRDNRKRPAPMLYHDDNQLIWDIEQTDEGWDRQKRETLAEDLRLLYVA
LTRPVLKCYLYIANHSRFTKKSGMSSQLHETAIGYLLGVEDKACDYDRLLAQAQLLQQKD
PQAISLSELPAAGSDEYSDTTLVVLEKEDTTEQQLAPKILNRPMLTPWRVGSYSGLVKHL
AHEKVLPGMDDEQFPELDVIQDEVDSSPSRFTFERGANAGSFMHLVLELIDFTQAETDLE
QQLPIAMAKYGIDESWTEVLKDWYLDLLYAPLASDNSLMLAQLTAGQKLVEMEFYLPINA
LSCDKLNSLLTEFGYSAGLSFDELQGMLKGFVDLTFEHNNQFFIADYKSNHLGDDLSQYH
YANMQHAIRSHRYDLQYIIYTLALHRYLALRMANYDYDLHIGGSFYLFLRGMSTSSPQSG
VFYDKPPKLLIEKLDALFGNQMTAQSIEQSNNAQVEVK
NT seq
3717 nt
NT seq
+upstream
nt +downstream
nt
atgagtgacgaaaaccgtgagaaccaaacagtaaatatgacaacttcagccagtagccag
ttaagtgccaatatcgtcaccgaagcgttagataccctaacccttccctttggcggtagc
cgtttaatcgaggccagcgccggtacaggtaaaacctttaccattgccggactctatgtg
cgcttactactcggtcatggtattgaagcgccgctcacctgcgagcaaattttggtggtg
acctttaccaacgccgcaacgggtgaacttagagaccgtattcgtaagaaaattcagctg
gcgtatcgctgttttatcggccttgaagtggacgatgaactgattaactctctctatcaa
gccacgcctgaagcaagcctgcctatcgcccgtaaacgtctagacttggcgttaaaatcc
ctcgatgaggcggctattttcactattcacggtttttgtcagcgcatactggcggatatg
gcgttcgagtcatccttgctatttgagtcagagtttaccctagatgatagcgagttcctg
caccatgcggtacgggatttctggcgcgagagatgctacccgttaacaggctgcttagcc
gatgcgattatcagtaaatttagcgatcccgataccctttctcgtcagctcaggccgctt
cttggtgccagcagcgctgtcgccagtccaaaacctcaagcctttgaaaaacttgaggct
gaactaagccagagtctaagccgctttaaacttatctggcctagagagcgcgaacaaacc
gaaaccttgttacacgccttgccgctcaacggcgcacgttttggcaagaaagctgacggc
tacccgaaactggctaagatgctcgatgatctcgataactgggtcgccttcggtcaggct
ctgccaccagcaaaagtacttgaagccctatcgcttaacgagcttaagttaaataaaggc
ggtgaagtgcccacggcgcagcaagcgcctatgctggatcatatcgaaagactggcacaa
cttatcgcaaaccttattccgagctttctgtattgtgcaagagatggcatcgcctcacgt
tttgccaagcaaaagcttgagcgtaacctgctgaccccagatgatctgctgctaacactg
gctaaagcacttaacgtcagccaagataatcgcttagccagcagtatcgcccaacgcttt
ccggtggcgttaattgacgagttccaagatactgacccattgcagtttgagatctttaac
gctatctatcaaagcagtggctctaaaagtacagcagctaatggtgataaaacgccaaac
gacaaactcagcctgctaatgattggcgatcccaaacaggcgatctacgcctttcgcggc
gccgacattcatacttatattcaggctcgcgcccaaacggctaaacactataacctagat
accaactatcgctctaacaggcagatggtggatgcggtcaacgggatcttcaaccacaga
gacgatccctttatcagccaatctatccccttcgagccagtaaaagcatcaagctttgct
gacaagaaagtgcttaatgaaagagcagcagacagcagcgctctcaggttaaggctatta
agtgaagaagctgaaaaagggctcaataagaccacggccagacagttaatcgccgatgat
gtggccgatgaaattgcgaggctgttaattgatgcacagcaaaatctttgtgcgattggc
accaagccacttagagccaaagatattgcaatcttggtcagagacagacacgaagccaat
gtggtccgagctgcattaagtgagcgtcaaattggctcggtattcttaagccgagatagc
gtatttaacactttagaagccagagagcttgcgctagtgctgtatgcgatggccgatcct
aaagatgagcgcgcattaagaagtgctctagccacctcattgctcggttatagcgccgag
gcgatccatagctttaaccaagatgaagataagcgtcagacactgctcgaacaatttgcg
cagctacatcaagtttggttaaagcgcgggataatgcctgcgctactgacacttgctagc
caaacacagatcatcgagcgtttgcttagtggtgaagagggagatagacgcttaactgac
tttagacacctaggtgagctattgcagcaaaaagccaccgagctcgatggtagcagcgcg
cttatcaactggtatgagcaagcgcttattgaaaacctgccaaatgaagaggcgcagctg
cgtttagagagcgagcaaaaccttgtccaagtagtcacgattcataagagtaagggactc
gaataccctatctgttttgtgccctttgtcagcctgagccgcgataaccgtaaaagacct
gcccccatgctttaccatgatgacaatcagcttatctgggatattgaacagacagatgaa
ggctgggatcgacaaaagcgtgaaaccttggccgaagatctgcgcctactctatgttgcg
ctgacaagacccgtgcttaagtgttatctgtatatcgccaatcatagccgatttactaaa
aagtcgggtatgagcagtcaattacatgaaaccgccataggttatctgttgggcgttgaa
gataaggcctgcgattatgaccgactactcgcccaagcccaattactgcaacaaaaggat
cctcaggccatcagcctgtcagagctacctgcggcgggttcagatgaatacagtgacaca
acactagtcgtgctagaaaaagaggacaccactgaacagcagcttgcgcctaaaatacta
aacaggcctatgttaacgccgtggcgtgtaggcagttactcaggcctcgtaaaacattta
gcccatgaaaaagtgctaccgggtatggatgatgagcagttccctgagctcgatgtgatc
caagatgaagtggatagctcgccatcacgctttacctttgagcgcggcgctaacgccggt
agctttatgcacttagtgctggagctgattgattttacccaagccgaaacagatcttgag
cagcaactgcctatcgccatggcaaaatacggtatagacgagagctggactgaggtactt
aaagattggtatctggatctgctttatgcgccgttagccagtgataactccttaatgctg
gcccagctgactgcggggcaaaagttggttgagatggagttttacttgccaatcaacgcc
cttagttgcgacaaactcaatagcctcttaactgaatttggttacagtgcaggccttagt
tttgacgaattgcagggtatgttaaaaggttttgtggatttaacctttgaacataataat
cagttttttattgccgattataagtcgaatcacttgggcgatgacttgagtcaatatcat
tatgccaatatgcaacacgccattcgcagccacaggtacgatctgcaatacatcatctat
acccttgctctgcaccgatatctggcgcttagaatggcgaactatgattacgatctgcat
atcggtggcagcttttacctcttcttacggggcatgtcgacaagcagtccacaatccggc
gtcttttatgataagccgcctaagttactaattgagaagctcgatgccttattcgggaac
cagatgacagcacaaagtattgaacagtcaaataacgctcaagtggaggtcaaatga
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