Shewanella pealeana: Spea_2504
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Entry
Spea_2504 CDS
T00606
Name
(GenBank) ribonuclease, Rne/Rng family
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
spl
Shewanella pealeana
Pathway
spl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Spea_2504
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spl03019
]
Spea_2504
03009 Ribosome biogenesis [BR:
spl03009
]
Spea_2504
Enzymes [BR:
spl01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
Spea_2504
Messenger RNA biogenesis [BR:
spl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Spea_2504
Ribosome biogenesis [BR:
spl03009
]
Prokaryotic type
rRNA processing factors
Spea_2504
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Extensin_1
DUF1997
Motif
Other DBs
NCBI-ProteinID:
ABV87824
UniProt:
A8H5I7
LinkDB
All DBs
Position
3049646..3052900
Genome browser
AA seq
1084 aa
AA seq
DB search
MKRMLINATQSEELRVALVDGQQLYDLDIESPGHEQKKANIYKGTITRVEPSLEAAFVDY
GAERHGFLPLKEIAREYFPKGYSFQGRPNIKEVVKEGQEVIIQIDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDERTELKAALAELEVPQGMGLIVRTAGVGKDPAEL
KWDLKVLQHHWAAIKEAAEGAPAPFLIHQESNVIVRAIRDYLRRDVGEILIDHPRIYEQA
KEHVSLVRPDFVERIKRYDAEVPLFTHYQIETQIESAFQREVRLPSGGSIVIDPTEALTS
IDINSARATKGGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVEK
RMQDAVHHDRARVQLGRISRFGLMEMSRQRLRPSLEESAAHLCPRCHGQGTIRGTESLAL
SILRLMEEEAIKENTSQIEAVVPVDVAAFLLNEKRKAIRITEKRHNVEVYVIPDPNMTTP
DYRVVRHRKDDEISESSYKLLEKEESKLYEPRKLERAAAPQPALKGFSTPKKAPVVETKP
AAPKKEEPGFFAKIAAAISSLFGSKEEPKAETKKQDKDSRGNQGRTNNRRNSNRRNDPRR
NRNENRSDNRNDSRNDSEQAKDKRSKNSRSDKSDDRSQAQEDTSKRQPRADKPRSRQEAS
NENEQPKQEAARERRQRRNMRRKVRVTNETEETKAVAAKVDTPVPTSVTNEDKPARPKRQ
PRKPKAKVEAVEAAEQTEVVSQVEAIVETPVEVPTPVVETPKPVVETTADAVTEENVAST
EETTSEDNTREPREGQRRSRRSPRHLRAAGQRRRRDGDAAQQNEDNQAFVAIDPVTTVVE
STSDVVVVAPTEANVEVKTDTIADVQVVAKAESTSEAQSPVVAPTEAIAVEATPVKAEIA
AEAPVAKPEVEAKPVVEPIVEAKPVVEPIVEAKPVVEPTVEAKPAVEPTVEAKPVVEPTV
EVKAKPSEPKAQKVESASKTASAPMAKPAAITPNVEKSVEVPAQVVEAKVTEPKLAEVAV
EAKPVAAKPASRFGSMVMSDTTKPTVENRENIATPMGRQYSASESAEATKPRTANSANSE
TVRT
NT seq
3255 nt
NT seq
+upstream
nt +downstream
nt
atgaaacggatgttaatcaatgcgactcaatctgaagagttgcgcgtagcccttgttgat
gggcaacaactttatgatctggatatcgaaagcccaggccatgaacaaaagaaagccaac
atttacaaaggcacaattacacgagtagaaccgtctcttgaagcggctttcgttgattat
ggtgctgagcgtcacggcttcctaccacttaaagaaatcgctcgagaatacttccctaaa
ggttactctttccaaggccgtcctaacattaaggaagtggttaaagaaggccaagaagtt
attatccagattgataaagaggaacgtggcaacaaaggtgctgcactaactacttttatt
agtcttgcaggttcttacctagttctaatgccaaataaccctcgtgcaggtggtatttca
cgtcgtatcgaaggtgatgagcgtacagagcttaaagccgctcttgccgagcttgaagtg
ccacagggtatgggtctaattgttcgcaccgctggtgtgggtaaggatccagccgaattg
aagtgggacttaaaggtacttcaacaccactgggctgcaattaaagaagcagcagaaggt
gcaccagctcctttcctaattcatcaagaaagtaacgtaattgttcgtgctattcgtgac
tatttacgtcgcgacgttggtgagatattaattgaccacccacgcatttatgaacaagca
aaagagcacgtttctcttgttcgtccagactttgttgaacgtattaagcgctatgacgct
gaagtaccactatttacacattaccagatcgaaacacaaatcgaatctgcgttccaacgt
gaagtgcgccttccttctggtggttcaatcgtaatcgacccgacagaagccctaacctct
atcgatattaactctgcccgtgcaactaaaggcggcgatatcgaagagacagcactgaat
acaaaccttgaagcggcagacgaaattgctcgtcaattgcgtcttcgtgacttaggcggt
ttggttgttatcgactttatcgatatgacgcctgtgcgccatcaacgtgaagttgaaaaa
cgtatgcaagacgccgttcatcatgaccgcgctcgcgtacaattaggtcgtatttcacgc
tttggcttgatggaaatgtcgcgtcagcgcctacgtccttcgctagaagagtctgctgcg
cacctatgccctcgctgtcatggacaaggtactattcgtggtacagagtctctagcacta
tctattcttcgtctaatggaagaagaagcaattaaagagaacacatcgcaaattgaagcg
gttgttcctgttgatgttgccgctttcctacttaacgaaaagcgtaaagcgattcgcatc
actgaaaagcgtcataacgttgaagtgtatgtcattccagatccaaatatgacaacacca
gattaccgtgttgttcgtcatcgtaaagatgatgagatcagtgaatctagctacaagtta
cttgagaaagaagagtctaagctatacgaaccacgtaagcttgaaagagctgccgctcca
cagccagcactaaaaggtttctctacgccaaagaaagcgccagtagttgaaactaaacct
gctgcaccaaagaaagaagagccaggtttcttcgctaaaattgctgcagcaattagctca
ctatttggctcaaaagaagaaccaaaagctgaaactaagaagcaagataaagacagtcgc
ggtaatcaaggccgcacaaataaccgtcgtaatagcaatcgtcgcaatgaccctcgccgt
aatcgcaacgaaaatcgcagcgataaccgaaacgatagccgcaatgacagcgaacaagct
aaagacaagcgtagcaagaacagtcgcagcgataaaagcgatgaccgttcacaggctcag
gaagacacgagtaagcgtcaaccgcgtgccgataagccacgctctcgtcaagaggctagc
aacgagaacgagcaaccaaagcaagaagctgcacgtgagcgtcgccagcgtcgtaacatg
cgccgtaaagtgcgtgtgactaacgagactgaagaaaccaaagcggtagccgctaaagtt
gatactccggtaccaactagtgtgactaacgaagacaaacctgcacgtccaaagcgtcaa
cctcgtaagcctaaggctaaagttgaagcggttgaagctgcagaacaaactgaagtagtg
agtcaggttgaagccattgtagaaacacctgttgaagtgcctacgccagttgttgaaacg
ccgaagcctgttgttgaaactacagcagatgctgtgacagaagaaaatgtagcttcaact
gaagaaactacttccgaagataatactcgtgagccacgtgaaggccaacgtagaagccgt
cgtagtcctcgccacttacgtgcagcgggccaacgccgtcgtcgtgatggagacgctgct
cagcaaaatgaagataaccaagcatttgttgcgatagatcctgtcacaactgttgttgaa
agcacttctgacgttgtcgttgttgcaccaactgaggctaatgttgaagttaaaactgat
acaatagctgatgttcaagtcgtagctaaagccgagtcgaccagcgaagctcagtctcct
gttgttgccccgactgaggcgattgctgttgaagccacacctgttaaagctgagatcgct
gcagaagccccagtagctaagcctgaagttgaagctaaacctgtagttgagccgatagtt
gaagctaagccagtggttgagccgatagttgaagctaagccagtggttgaaccaacagtt
gaagctaagcctgcggttgagccgacagtcgaagctaagcctgtggttgagccgacagtt
gaagtcaaggctaagccgagcgaacctaaagcacaaaaagttgaatcagcgtcaaaaaca
gcttctgctccaatggcaaaacctgcagcaatcacgcctaatgtcgagaaatcggtagaa
gtgccagctcaagttgttgaagcgaaggttacagagcctaagcttgctgaagtcgctgtc
gaagccaagcctgttgctgccaaacctgctagtcgctttggctcgatggtaatgtcagat
acgaccaagccaacagttgaaaacagagagaatattgctacacctatgggtcgccaatat
tcagcctcagagtcagctgaagcaactaagcctagaacggcaaacagtgctaattcagaa
acagttcgtacttaa
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