Shewanella pealeana: Spea_3027
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Entry
Spea_3027 CDS
T00606
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
spl
Shewanella pealeana
Pathway
spl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Spea_3027
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spl03019
]
Spea_3027
Enzymes [BR:
spl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Spea_3027
Messenger RNA biogenesis [BR:
spl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Spea_3027
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
UTP25_NTPase-like
AAA_22
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
ABV88344
UniProt:
A8H707
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All DBs
Position
complement(3711580..3712824)
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AA seq
414 aa
AA seq
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MSVSFSSLPLGDKLQRVLAQKGYQQPTAIQAEAIPVILSGQDIMASAQTGTGKTAAFTLP
LLQRLLDRSAEDCLTSRLPTALILVPTRELAVQVNGNVSQYAVNTDIASVVIYGGVSIDA
QATKLAAGCDIIVATPGRLLDHLRRGSLNLSSIDYLVFDEADRMLDMGFMDEISAILTRL
PAKRQTSLFSATFSTAIYDLSKKLLHKPARIEVDKANSAADSVEQIVYAVDSDRKTELIC
HLIKKYDWHQVLIFSRKKQTADTIAQKMLATGIETKAFHGDLGQGAREQVLNDFKQGKIK
ALVATDVAARGLDIVELKYVVNYEIPFIAEDYIHRIGRTGRAGSVGKAVTLYSEDDALLL
EEVETVLDKRLAPQWLPGFEPDLTKSEPVSRKNSKTAQRQRAKRRALGGSNRRR
NT seq
1245 nt
NT seq
+upstream
nt +downstream
nt
atgtcagtgtcattttcatctctccccttaggtgacaaacttcaacgcgtgcttgcgcaa
aaaggctaccaacagccaacggccattcaagccgaggctatcccggttattttaagcggt
caagatatcatggcgagcgcgcaaactgggacaggtaaaaccgccgcattcaccttgcca
ctactgcaacgcttgctcgatagaagcgccgaggattgtttgactagccgactgcccact
gcgcttatcttagtgccaacgcgagagctcgcagtgcaagtgaacggcaatgttagccag
tatgcggttaatacagatattgctagcgtggtgatctatggtggtgtgagtattgatgct
caggcaacaaaattagctgcgggctgcgatattattgtcgcgacaccgggacgcttgcta
gatcaccttcgccgtggctcattgaacctatcgagtattgactacttagtattcgatgaa
gccgatcgcatgctagacatgggttttatggatgaaattagtgccatcttaacgcgtctg
ccggctaagcgtcagacctcgctattttcggccacctttagcacggcaatttatgattta
agtaagaagctattgcataaacctgcacgaatagaggtcgataaagccaatagcgctgca
gacagtgttgagcagatagtctatgccgtagatagtgatcgtaagacagagttgatttgt
catctaatcaagaagtatgactggcatcaggtgcttatttttagccgcaagaagcagacc
gccgatactattgcacaaaagatgttagcgaccggaattgagactaaggcgtttcatggt
gacttaggccaaggtgctcgagaacaggtgctcaatgattttaagcagggcaagattaaa
gcgcttgtggctaccgatgtagcagctagagggttagatattgttgagcttaaatacgtg
gtcaactatgagatcccctttattgccgaagattacatccaccggatcggccgtactggg
cgcgcaggtagtgtgggcaaagcggtaactctatatagtgaagatgatgccttactgctt
gaagaggtggagacggtgttagataaacgcttggcaccgcaatggctgccaggttttgag
ccggacttaaccaagagcgaacctgttagtcgaaagaatagcaaaacggctcagcgtcaa
agagctaagaggcgcgccttgggaggcagtaatcgccgccgataa
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