Shewanella pealeana: Spea_3055
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Entry
Spea_3055 CDS
T00606
Name
(GenBank) Polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
spl
Shewanella pealeana
Pathway
spl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Spea_3055
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spl03019
]
Spea_3055
03016 Transfer RNA biogenesis [BR:
spl03016
]
Spea_3055
Enzymes [BR:
spl01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
Spea_3055
Messenger RNA biogenesis [BR:
spl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
Spea_3055
Transfer RNA biogenesis [BR:
spl03016
]
Prokaryotic type
tRNA degradation factors
Spea_3055
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
S1
RNase_PH_C
KH_1
KH_2
S1_2
KhpA-B_KH
aRib
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
ABV88372
UniProt:
A8H735
LinkDB
All DBs
Position
complement(3746741..3748855)
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AA seq
704 aa
AA seq
DB search
MVHVNPIVKSFQYGQHTVTLETGVIARQADAAVLASMGDTTVLVTVVGKKFEEPGRDFFP
LTVNYQEKTYAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPNGFKNEVQVIITVV
SVDPEISPEVISMIGTSAALSISGIPFNGPLGSARVGYVNGEYILNPTVSQLVDSQLELS
VAGTESAVLMVESEASALPEEVMLGAVVYGHDQQQVVIQAIKELQAEVNKPVWDWSAPAQ
DETLVAKIKDLAEAGLTEAYQIEVKQDRYAQVGVVKNAAKEALLAENPDANTREIDGLLG
SLEKKVVRGRIISGQPRIDGREPDMVRALNVMAGVLPRTHGSSLFTRGETQALVTCTLGT
ERDAQKIDSIMGEYTNRFMLHYNFPPYSVGETGMVGSPKRREIGHGKLAWRGINAVMPTA
EEFPYSVRIVSEITESNGSSSMASVCGTSLALMDAGVPIKTSVAGIAMGLVKEGDDFVVL
SDILGDEDHLGDMDFKVAGTRDGITALQMDIKIEGITKEIMQIALKQAYGARVHILDVMD
RAISGHRGDISEHAPRITTIKINPEKIRDVIGKGGATIRALTEETGTTIELDDDGTVKIA
SSNGEATKEAIRRIEEITAEVEVGTVYNGKVVRIVDFGAFVTILPGKDGLVHISQIAEER
VANVSDYLEVGQEVKVKVMEVDRQGRVRLSMKEAAPKAEAPAAE
NT seq
2115 nt
NT seq
+upstream
nt +downstream
nt
atggttcacgtgaatccaatcgtaaagagttttcaatatggtcagcacacagtcacatta
gagactggggttattgcacgtcaagcagatgcagctgttttggcaagtatgggtgataca
acagtattggttactgttgttggcaagaagtttgaagagccaggccgtgactttttcccg
ctaaccgttaattaccaggaaaaaacatacgcagcaggtaagatccctggtggattcttt
aagcgtgaaggtcgtccatctgaaggcgaaacgcttacagctcgtctaattgaccgtcca
atccgtccactattcccgaatggtttcaagaacgaagttcaggttatcattacagtagtt
tctgttgatccagaaatcagcccagaagttatctctatgatcggtacttcagctgcactt
tctatctctggtattccatttaatggtccactaggttcagcgcgtgttggttatgttaat
ggtgaatatatccttaacccaacagtttctcagctagttgatagccagctagagctttct
gttgctggtactgaaagtgcagtactaatggttgaatcagaagcaagcgcactacctgaa
gaagtgatgttaggtgcggttgtttatggtcacgatcagcagcaagtggttattcaagca
attaaagagctacaagctgaagttaacaagcctgtatgggattggtctgcacctgcgcaa
gacgaaacgcttgttgctaagatcaaagatttggctgaagcaggtcttactgaagcttac
caaattgaagttaagcaagatcgttacgctcaagttggtgtagttaagaatgctgctaaa
gaagcattattggctgaaaacccagatgctaacacacgtgaaatcgacggtcttctaggt
agcctagagaagaaagtggttcgtggccgtattatctctggtcagccacgtatcgatggt
cgtgagccagatatggttcgtgcacttaacgttatggctggtgtacttccacgtactcac
ggtagctcactgttcactcgtggtgaaactcaggcgctagtaacttgtactcttggtaca
gagcgtgatgcacagaagattgatagcatcatgggcgagtacactaaccgctttatgctt
cactacaacttccctccatactctgttggtgaaacaggcatggttggttctcctaagcgt
cgtgaaattggtcacggtaagctagcatggcgtggtattaacgcggttatgcctactgct
gaagagttcccatacagcgttcgtatcgtatctgaaatcactgaatctaacggttcaagc
tctatggcgtcagtttgtggtacttctcttgctcttatggatgcaggtgtaccaatcaag
acttctgttgcgggtatcgcgatgggtctagttaaagaaggcgacgatttcgttgttctt
tctgacatcctaggcgatgaagatcaccttggtgacatggactttaaagttgcgggtact
cgcgacggtattactgctctgcagatggatatcaagatcgaaggtatcactaaagagatc
atgcagattgctcttaagcaagcatacggcgctcgtgttcatatcctagacgtaatggat
agggctatctctggccaccgtggtgatatttctgagcatgctccacgtatcacaactatc
aagatcaaccctgagaagatccgtgatgttattggtaaaggtggtgcaacaattcgtgca
cttactgaagaaaccggtacgactatcgaacttgatgacgacggtacagtgaagattgct
tcttcaaatggcgaagcgactaaagaagctatccgtcgtatcgaagagatcactgcagaa
gttgaagtcggtactgtatacaacggtaaagttgttcgtatcgtagattttggtgcattc
gtaacaattcttcctggtaaagatggtctagtacacatttctcaaatcgctgaagagcgt
gttgcgaacgtgtctgactacttagaagtaggtcaagaagttaaagttaaagtgatggaa
gttgaccgtcaaggccgtgtacgtctttctatgaaagaagctgcacctaaagccgaagcg
ccagctgctgaataa
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integrated database retrieval system
