Shewanella pealeana: Spea_3616
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Entry
Spea_3616 CDS
T00606
Name
(GenBank) RNA polymerase, sigma 54 subunit, RpoN
KO
K03092
RNA polymerase sigma-54 factor
Organism
spl
Shewanella pealeana
Pathway
spl02020
Two-component system
spl02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
spl00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
Spea_3616
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
Spea_3616
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
spl03021
]
Spea_3616
Transcription machinery [BR:
spl03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
Spea_3616
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
Motif
Other DBs
NCBI-ProteinID:
ABV88929
UniProt:
A8H8P2
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All DBs
Position
4407138..4408601
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AA seq
487 aa
AA seq
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MKASLQLKMGQQLTMTPQLQQAIRLLQLSSLELQQEIQQALDSNPLLELDEEQSDGDLGD
NEDQSSNDANSDLIQDSASVETSDALTQDSMPDDLPMDTTWDEVYTVSSNSSSGVSREDD
MPFQGETSEGLYEHLEWQKNLTPFSDNDLAIATAIIDAIDERGYLTQSCDDILEAMGDPE
TELDEVEAVLKRIQHFDPIGVAARNLSECLLIQLAQYAAETPHIDNARLLIKDYLDLIAG
RDFRQLMRKTKLKEDELRDAITLIQTLNPRPGLAIARSKDEYVIPDVSVCKKKGRWVVEL
NPDYMPKINVNQHYASMARSTTNQADGQFIRGHLQEAKWFIKSLESRNDTLLKVTNCIVK
FQQGFFEYGEEAMKPMVLNDIAEAVEMHESTISRVTTQKYMHTPRGIFELKYFFSSHVGT
DDGGECSSTAIRAFIKKLVAAENQKKPLSDSKMAQLLAEQGIKVARRTIAKYREAMLIPP
SNQRKSL
NT seq
1464 nt
NT seq
+upstream
nt +downstream
nt
atgaaagcgtcactccagctcaaaatgggtcagcagctcaccatgactccccagttacaa
caggccattcgcctgttacaactgtcttctttagagctgcaacaagagatccaacaagca
ttagactctaatccgctattggaattagatgaagagcagtcagacggtgatttaggcgac
aatgaagaccaatcatcaaacgatgccaatagtgacctcatccaagatagcgctagcgtt
gaaacctccgatgccctaacccaagactctatgccagatgatctgccaatggacaccact
tgggatgaagtttataccgtctcgtcaaactccagctctggagttagccgtgaagacgat
atgccattccaaggtgaaaccagcgaaggcttatatgaacatttagagtggcagaaaaac
ctcacaccgttttcagataacgatcttgcaatcgccaccgcgattatcgacgccattgac
gaacgtggctaccttacccaaagctgcgacgatattttagaagctatgggcgatcctgaa
accgagcttgatgaagtcgaagcggtattaaagcgcatccagcattttgaccctattggt
gtcgccgcgcgtaatttgagtgaatgcttgcttatccagctggcacaatatgctgcagaa
accccgcatatcgacaatgccagattactgataaaagattatttagacttaattgcaggc
cgcgattttaggcagttaatgcgtaaaaccaagcttaaagaagatgaactacgtgatgcg
ataacacttattcagacccttaatccaagaccagggctggcgattgctcgcagcaaagac
gagtatgttatccctgacgtttccgtgtgcaagaaaaaaggtcgctgggtggttgagctt
aatcctgactatatgcctaagattaatgttaaccaacattatgcctctatggcgcgtagc
accactaatcaggccgatggtcaatttattcgtggtcatctgcaggaagctaagtggttt
attaagagtctcgagagtcgtaatgacaccttattgaaagtaaccaactgtatcgttaaa
ttccagcaaggcttctttgagtatggcgaagaagccatgaagcctatggtactcaatgat
attgccgaagcagttgagatgcacgagtcgaccatttcacgggtgactacccaaaaatat
atgcacactccaagaggtatttttgaactaaagtacttcttctcaagccatgtcggtacc
gacgatggtggggagtgttcatcgaccgcaatcagagcgtttattaagaagttagtcgcc
gcagaaaaccagaagaagccattaagcgatagcaagatggcacaacttttggcagaacaa
gggattaaagttgctagacgtacgatagcaaaatatcgagaagcgatgctgatccccccc
tcaaaccaacgtaagagtttataa
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