Streptomyces platensis: CP981_13325
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Entry
CP981_13325 CDS
T07341
Name
(GenBank) ribonuclease E/G
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
spla
Streptomyces platensis
Pathway
spla03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spla00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CP981_13325
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spla03019
]
CP981_13325
03009 Ribosome biogenesis [BR:
spla03009
]
CP981_13325
Enzymes [BR:
spla01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
CP981_13325
Messenger RNA biogenesis [BR:
spla03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CP981_13325
Ribosome biogenesis [BR:
spla03009
]
Prokaryotic type
rRNA processing factors
CP981_13325
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
HC2
Motif
Other DBs
NCBI-ProteinID:
QEV52514
UniProt:
A0AAE6NGG5
LinkDB
All DBs
Position
complement(3030518..3034312)
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AA seq
1264 aa
AA seq
DB search
MLEPIEPTGSTHSQDRGADDNNNHSPSDTLPPRRRRRAASRPAGPPAAGAAAEAAVMSTE
ATAAPAADPALAEESTAAAVTTGDEAKPARTRRRATRKVTSPAGAPQPAAEAETAEEEAD
EAETAEAPAVAVETPAEAPQEEAAPRRTRRRATRKVTAPAGTPQTEAAPEPVVAEASATG
EAPAPAEAAAETAAEAPQEEAAPRRTRRRATRKVTAPAGAPQASAADEAAAADVAPAAPA
AEDEEAAPAPVEEAKPARTRRRATRKTTAASDAPQAAETAEEPAAAEPAQAPAAEDATAE
APRRRARRRGERAAEPAAEAPRAEEEPATEAPQRGRRRAQRPPTAVFQAPVFTEPMFQTP
ETAAAAAAAAQQEETPAEPAVEEQPAAGARRRRRRGAPAEPEQVAAAPAEEPAADEEAAA
EAEPEAEQAEGGRGEDESADRPSRRRRRGGRRRRRGESADGADEAADEREAPEAEAEEAE
EQAAEEQDEAEESAGGSSSSRRRRRRRRRTGEPAEAEAGGADDPERTVVKVREPRKKDES
TSADEVQSIKGSTRLEAKKQRRREGREQGRRRVPIITEAEFLARREAVERVMVVRQSGER
TQIGVLEDNVLVEHFVNKEQATSYVGNVYLGKVQNVLPSMEAAFVDIGKGRNAVLYAGEV
NFEALGMANGPRRIETALKSGQSVLVQVTKDPIGHKGARLTSQVSLPGRYLVYVPEGSMT
GISRKLPDTERARLKQILKKIVPEDAGVIVRTAAEGASEEELARDVQRLQAQWEEIQKKA
KSNSSSAPTLLYGEPDMTVRVVRDIFNEDFSKVIVSGDDAWETIHGYVAHVAPDLVDRLQ
KWTSDVDVFATYRIDEQLMKALDRKVWLPSGGSLVIDRTEAMIVVDVNTGKFTGQGGNLE
ETVTRNNLEAAEEIVRQLRLRDLGGIIVIDFIDMVLESNRDLVLRRLLECLGRDRTKHQV
AEVTSLGLVQMTRKRVGQGLLESFSESCVHCNGRGVIVHMDQPTTAGGGGKRKKKGKAEK
AEPHVHEAEVAPTPDGATPELEPVAVTEAELQPAVAEADEWFSSPAEAEAAASRGRGRRR
ASRKASAPAGAPKATEPAEIVVPAEPVAAPEPEPAPEPVAEALAAEAPVAEPAPARPRRR
VTRKVAAPQVSDDSTATVVIAAPAAEPVTEPAPAEPAEPAEGAEAEPAAKKTAKKATTKK
AAAKKTTAKKTTAKKTAAKKTTTAKKATAKKTTAKKTTTKKAAAKKTAAAEQPSVPSVSA
SAED
NT seq
3795 nt
NT seq
+upstream
nt +downstream
nt
atgctcgagcccattgagcccaccggatccacgcattcccaggatcgcggtgctgacgac
aacaacaaccactcacccagcgacacgctgccgccgcgccgccggcgccgcgcggcatcc
cggccggccggtccgccggcggccggtgccgccgccgaggccgcggtgatgagcaccgag
gccaccgccgcgcccgcggcggacccggccctcgccgaggagagcaccgcggccgcggtg
accaccggcgacgaggccaagccggcccgtacccgccgccgggcgacccgcaaggtcacc
tccccggccggcgccccgcagccggccgccgaggccgagaccgctgaggaagaggccgac
gaggccgagacggccgaggccccggccgtcgccgtcgagacgcctgccgaggcaccccag
gaggaggcggcaccgcgccgcacccgccgccgggcgacccgcaaggtgaccgcccccgcc
ggtaccccgcagaccgaggccgccccggagccggtggtcgccgaggcgtccgcgaccggc
gaggcgcccgcccccgccgaggccgccgccgagacggccgccgaggcgccgcaggaggag
gcggcaccgcgccgcacccgccgccgggccacccgtaaggtcaccgctccggccggcgcc
ccccaggcgagcgccgccgacgaggccgccgccgcggacgtggcccccgccgccccggcc
gccgaggacgaggaggcggcgcccgcccccgtcgaggaggccaagcccgcccggacgcgt
cgtcgcgccacccgtaagaccaccgccgcctcggacgcgccgcaggccgccgagacggcc
gaggagcccgcggcagcggagcccgcgcaggcaccggccgccgaggacgcgaccgccgag
gcgccccgccgccgggcgcgccgccgtggcgagcgtgccgcggagccggccgccgaggcg
ccccgtgccgaggaggagcccgcgacggaggcaccgcagcgcggccgccgccgtgcgcag
cgccccccgaccgccgtcttccaggcgccggtcttcaccgagccgatgttccagacgccg
gagaccgcggccgccgccgctgccgcggcccagcaggaggagaccccggccgagccggcc
gtggaggagcagcccgccgcgggtgcgcgccgccgtcgccgtcgtggcgccccggccgag
cccgagcaggtcgccgccgccccggccgaggagcccgcggccgacgaagaagccgcagcc
gaagcagagccggaggccgagcaggcagagggcggccgcggcgaggacgagtccgccgac
cgcccctcgcgccgccgccgccgtggtggccgccgccgtcgtcgcggtgagtccgccgac
ggcgccgacgaggccgccgacgagcgggaggccccggaggcggaggccgaggaggccgag
gagcaggccgccgaggagcaggacgaggccgaggagtcggccggcggttccagcagcagc
cgccgtcgccgtcgccggcgtcgccggaccggtgagcctgccgaggcagaggccggcggt
gccgatgacccggagcgtacggtcgtcaaggtccgtgagccccgtaagaaggacgagagc
accagcgccgacgaggtgcagtcgatcaaggggtcgacgcgtctggaggccaagaagcag
cgccgccgggaaggccgcgagcagggccgtcgccgggtgccgatcatcaccgaggcggag
ttcctggcccgccgcgaggccgtcgagcgggtgatggtcgtccgccagagcggcgagcgc
acccagatcggcgtccttgaggacaacgtgctcgtggagcacttcgtcaacaaggagcag
gcgacctcgtacgtcggcaatgtctacctcggcaaggtgcagaacgtcctgccgtcgatg
gaggccgcgttcgtcgacatcggcaagggccgcaacgccgtgctctacgccggtgaggtc
aacttcgaggcgctgggcatggccaacggcccgcgccggatcgagaccgcgctgaagtcg
ggccagtccgtgctggtgcaggtcaccaaggacccgatcggccacaagggcgcccggctc
accagccaggtctcgctccccggccgctacctggtctacgtgcccgagggctcgatgacc
ggcatcagccgcaagctgcccgacaccgagcgggcgcggctgaagcagatcctcaagaag
atcgtccccgaggacgcgggcgtcatcgtgcgtaccgcagccgagggggcgagcgaggag
gagctggcacgcgacgtccagcggctccaggcccagtgggaagagatccagaagaaggcc
aagagcaacagctccagcgcgccgaccctgctctacggcgagccggacatgaccgtccgg
gtcgtccgcgacatcttcaacgaggacttctccaaggtcatcgtcagcggtgacgacgcc
tgggagaccatccacggctatgtcgcgcatgtcgccccggacctcgtcgaccggctccag
aagtggacctcggacgtcgatgtcttcgcgacgtaccgcatcgacgagcagctgatgaag
gcgctggaccgcaaggtctggctgcccagcggtggttcgctggtgatcgaccggaccgag
gccatgatcgtggtcgacgtcaacaccgggaagttcaccggccagggcggcaacctcgag
gagacggtcaccaggaacaacctggaggcggccgaggagatcgtgcgccagctgcggctg
cgcgacctcggcggcatcatcgtgatcgacttcatcgacatggtgctggagtccaaccgg
gacctggtgctgcggcgcctgctggagtgcctgggccgggaccggaccaagcaccaggta
gccgaggtcacctcgctcggcctggtccagatgacccgtaagcgggtcggccagggcctg
ctggagtccttctccgagtcgtgtgtgcactgcaacggccgtggcgtcatcgtccacatg
gaccagccgacgacggccggcggcggtggcaagcgcaagaagaagggcaaggccgagaag
gccgagccgcacgtccacgaggcagaggtcgcgccgaccccggacggtgccacgccggag
ctggagcccgtcgccgtgacggaggccgagcttcagcccgcggtggccgaggccgacgag
tggttcagcagcccggccgaggccgaggcggccgcctcgcgtggccgtggccgccgccgg
gcgagccggaaggcatctgctccggcgggcgccccgaaggccacggagcccgccgagatc
gtcgtgccggccgagccggtggcggcgcccgagccggagcccgctccggagccggtcgcc
gaggcgctggccgcggaggcaccggtcgcggagcccgcgccggcccgtccgcgccgccgg
gtgacccgtaaggtggccgccccgcaggtgtccgacgactccacggccaccgtcgtgatc
gccgccccggcggctgagccggtcaccgagccggcgccggccgagcccgcggagcccgcc
gagggcgccgaggcggagcccgcggccaagaagaccgcgaagaaggcgacgacgaagaag
gcggcggccaagaagaccaccgcgaagaagaccacggccaagaagacggcggcgaagaag
accaccaccgccaagaaggccacggcgaagaagaccaccgcgaagaagacgacgacgaag
aaggcggcggccaagaagaccgctgccgccgagcagccctcggtgccgtcggtgtcggct
tccgcggaggactga
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