Sulfuriferula plumbiphila: SFPGR_06510
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Entry
SFPGR_06510 CDS
T06621
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
splb
Sulfuriferula plumbiphila
Pathway
splb02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
splb00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
SFPGR_06510 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
splb03021
]
SFPGR_06510 (rpoD)
Transcription machinery [BR:
splb03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
SFPGR_06510 (rpoD)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
FliB_C
SPO22
MitMem_reg
GTP_EFTU
ESM4
TMEM120A-B
Motif
Other DBs
NCBI-ProteinID:
BBP03229
LinkDB
All DBs
Position
complement(622876..624762)
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AA seq
628 aa
AA seq
DB search
MANDHEKGEVKTVDVEARRTRLKNLIVLGKERGYLTYAEINDHLPDDMLDAEQIEGVISM
INDMGIQVYDEAPDAETLLMSDAAPAVADEDVVAEAEAALSTVDSEFGRTTDPVRMYMRE
MGSVELLTREGEIEIAKRIEDGLKHMIQAISACPTTIQEILTLVDKVEREEIRIDDFVDG
VVAEELEAIASEPEVDISELEEELDEDAEEDDGSALAAANLAQLKIDAMAHFEVIRKVFK
RIQATLKKNGFGSPQYLQLQEELSAELMNIRFSAKQVEALCEGLRNLVEEVRSHERDIME
FAVNKSGMPRAHFIKVFPGNESNLDWVTKEINSKKAYSEDLTRYQHTIVERQQRLIALQE
KVGIPIKDLKEINRQMSTGEARARRAKREMIEANLRLVISIAKKYTNRGLQFLDLIQEGN
IGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKMNRISRQ
ILQETGKEPDPELLAEKMEMTEEKIRKILKISKEPISMETPIGDDEDSHLGDFIEDTATL
APIDAAVYGSLQEVTKDILDGLTQREAKVLRMRFGIEMNTDHTLEEVGKQFDVTRERIRQ
IEAKALRKLRHPSRSDRLKSFIDNSGNS
NT seq
1887 nt
NT seq
+upstream
nt +downstream
nt
atggcaaacgatcacgaaaaaggcgaggtgaaaacggtagatgtcgaagcccgacgcaca
cgcctgaagaatctgattgtgctcggcaaggagcggggctacctgacctacgccgagatc
aacgaccatttgccagatgacatgctggatgccgaacagatcgaaggcgtcatcagcatg
atcaatgacatgggcatccaggtctatgacgaagcccctgatgccgagaccctgttgatg
tccgacgccgccccggcagtcgccgatgaggacgtggtggccgaggccgaggctgcgtta
tctaccgtggattccgagttcggccgcaccactgacccggtgcgcatgtacatgcgcgaa
atgggctcggtggaactgctcacgcgtgaaggcgaaatcgaaattgccaaacgcattgaa
gacggcttgaaacacatgattcaggccatctccgcctgtcccaccacgattcaggaaatc
ctgacactggtggacaaggttgagcgtgaggaaattcgcattgacgatttcgtggatggt
gtcgtagcagaagaactcgaagcgatcgccagcgagcccgaggttgacatcagcgaactc
gaagaagagctcgacgaagatgccgaggaagatgacggtagcgcgctggctgcagccaat
ctcgctcagctcaagatcgacgccatggcgcactttgaagtcatccgcaaggtattcaag
cggatacaggccacgttgaagaaaaacggcttcggcagcccgcagtatctgcaactgcag
gaagagctctccgctgagctaatgaatatccgcttttctgccaagcaagtcgaggcgcta
tgcgaaggcttgcgcaatctggtggaagaagtccgcagccacgagcgtgacatcatggaa
ttcgcggtgaacaaatcaggtatgccccgcgcccacttcatcaaggtgtttccaggcaac
gaaagcaatctggactgggttaccaaggaaatcaattcgaaaaaggcctactcagaggat
ttgacacgctaccagcacactatcgtcgaacgtcagcaacgcctgattgccctgcaggaa
aaagtgggcatcccgatcaaggacttgaaggaaatcaatcgccagatgtccactggcgaa
gcgcgcgcgcgccgcgccaaacgtgaaatgatcgaggccaacctgcgcctggtgatttcc
attgcaaaaaaatacaccaaccgtggcctgcaattcctcgacctgatccaggaaggcaac
atcggcctgatgaaagccgtggacaaattcgaataccggcgcggctacaagttctcgacc
tacgccacctggtggatccgtcaggccatcacccgctccatcgcggatcaggcacgcacc
attcgtattccggtgcacatgatcgagaccatcaacaagatgaaccgtatctcgcgtcag
attcttcaggaaaccggcaaggaacccgacccggaattgctggccgaaaaaatggaaatg
accgaggagaaaatccgcaagatactcaaaatctccaaagagcctatttccatggaaacc
cctatcggcgacgacgaggattcccatctgggcgatttcatagaagacaccgccacgctg
gcgccgatagacgccgccgtttacggcagcctgcaggaagtgaccaaggatattctcgat
ggcctgacgcaacgcgaagccaaagtgctgcgcatgcgtttcggcatcgagatgaatacc
gaccacaccctggaggaagtcggcaaacagttcgacgtaacccgtgagcgtatccgccag
atcgaagccaaagcgctgcgcaaactgcgccacccatcgcgctctgaccgtctcaagagc
ttcatcgacaacagcggcaattcctga
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