Sulfuriferula plumbiphila: SFPGR_07080
Help
Entry
SFPGR_07080 CDS
T06621
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
splb
Sulfuriferula plumbiphila
Pathway
splb03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
splb00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
SFPGR_07080 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
splb03021
]
SFPGR_07080 (rpoB)
03400 DNA repair and recombination proteins [BR:
splb03400
]
SFPGR_07080 (rpoB)
Enzymes [BR:
splb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
SFPGR_07080 (rpoB)
Transcription machinery [BR:
splb03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
SFPGR_07080 (rpoB)
DNA repair and recombination proteins [BR:
splb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
SFPGR_07080 (rpoB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_1
RNA_pol_Rpb2_45
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
UbiD
Motif
Other DBs
NCBI-ProteinID:
BBP03286
LinkDB
All DBs
Position
677071..681144
Genome browser
AA seq
1357 aa
AA seq
DB search
MSYSFTEKKRIRKSFAKRASILQVPFLLATQIDSFRAFLQADVKPDSRANEGLQAAFTSI
FPIASHSGNAKLDFVSYVLGEPPFDMVECQQRGLTYAAPLRAKVRLTIMDREASKPTVKE
VKEQEVYMGEIPLMTPTGSFIINGTDRVIVSQLHRSPGVFFEHDRGKTHSSGKLLFSARI
IPYRGSWLDYEFDAKDYLYFRIDRRRKMPVTTLLKALGYNNEQILAEFFTTDTFHFAKKG
VQFELVPDRLRGEIARFDIVDKKGAVIVPKDKRITVKHIRMMQEAGLTKIAVPEEFVLGR
VLSANVVDKDSGEIVANANDEITETLLAKLHEAGIAKVNTIYTNDLDQGAYISATLRTDE
TPDQYAARVAIYRMMRPGEPPTEDAVEALFKGLFFNEDRYDLSAVGRMKFNRRVGRDELE
GAGILSTEDIVAVIKILVELRNGRGEIDDIDHLGNRRVRSVGELAENQFRAGLVRVERAV
KERLSQAESENLMPHDLINAKPVSAAVKEFFGSSQLSQFMDQTNPLSEITHKRRVSALGP
GGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLALFARTNKYGFLETPYRKVE
NGKVTDQIEYLSAIEESKYVIAQANAELDRNGKFTSEIVSCRHKNEFELASPDRIQYMDV
APSQIVSVAASLIPFLEHDDANRALMGSNMQRQAVPCLRAEKSLVGTGIERTAAVDSGTT
VQARRGGVVDYVDAGRIVVRVSDEETTAGEVGVDIYTLIKYTRSNQNTNINQRPLVKVGD
MLARGDVIADGASTDMGELALGQNLLVAFMPWNGFNFEDSILISERVVAEDRYTSIHIEE
LTVVARDTKLGPEEITRDISNLSERMLGRLDESGICYIGAEVEAGDVLAGKVTPKGETQL
TPEEKLLRAIFGEKASDVKDTSLRVPSGMAGTVIDVQVFTREGIERDARAKQIIDNQLSE
YKKDMADRMRIVEEDAFARLQRLLQNKVVKGGPKKLAKDSKITQDYLDSLNRHDWFDIRL
ADDEASRQMESLKDSLDQKRIEFDAMFEEKKKKLTAGDELPPGVQKMVKVYVAVKRRLQP
GDKMAGRHGNKGVVSKIVPIEDMPFMADGTPMDIVLNPLGVPSRMNVGQILETHLGWAAK
GLGKKIDDMLQAQKKVAEVRKFLTQIYNATGKSEDLASFSDDEIIELARNLRNGVPFATP
VFDGANEAEIKDMLELAGLPRSGQITLCDGRTGEAFDRPVTVGYMHVLKLHHLVDDKMHA
RSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYVLQEMLTVKSDDVTGRTKVY
ENIVKGEHKIEAGMPESFNVLVKEIRSLAIDIDLERY
NT seq
4074 nt
NT seq
+upstream
nt +downstream
nt
atgagttactcattcaccgagaaaaaacgcatccggaaaagtttcgcgaagcgcgcaagc
atcctccaagtgccttttttgctggccacccaaattgattccttcagggcttttctgcag
gccgatgtcaagcccgacagccgtgccaatgaaggtttgcaggccgcattcacctcgatt
tttcccatcgccagccattccggcaatgccaagctggatttcgtcagctacgtactgggt
gagccgccattcgacatggtggaatgccagcagcgcggcctgacctatgctgcgcccctg
cgtgccaaggtgcgcctgaccatcatggatcgcgaagcatccaagccgactgtgaaggag
gtcaaggagcaagaggtttacatgggcgagattccgctcatgacaccgactggctcgttc
atcatcaacggcaccgatcgcgtgatcgtgtcacagctgcatcgttcgccaggcgtattc
tttgagcatgaccgcggcaagacgcacagctccggaaagctgctgttctcggcgcggatt
attccttatcgcgggtcctggctggactacgaatttgacgccaaggattacctgtatttc
cgtattgaccgccgtcgcaagatgcccgtgaccaccctgctcaaggcgctgggctacaat
aacgagcagatcctggcggaattctttaccaccgatactttccactttgccaagaagggg
gtgcagttcgagctggtgccggatcgcctgcgtggcgagattgcgcgcttcgacattgtg
gacaagaagggcgcggtgattgtccccaaagacaagcgcattaccgtcaagcatatccgc
atgatgcaggaagccggattgaccaagatcgcggtaccggaagagtttgtgctgggacgc
gtgctgtcggccaatgtggtggacaaggatagcggtgaaattgtcgccaacgccaacgac
gagatcaccgaaacattgctcgccaagctgcatgaggcaggtatcgccaaggtcaatacc
atctacaccaatgacctggaccagggcgcatatatttctgccaccctgcgtaccgatgag
accccggatcagtatgcggcaagggtcgccatctaccggatgatgcggccaggcgagccg
cctaccgaagatgcggtggaagcgttgttcaagggtttgttcttcaatgaagatcgctat
gacctgtctgccgtcgggcgcatgaaattcaaccgccgggttggccgcgacgaactggaa
ggcgccggtatcctgagcaccgaggacattgtcgcggtgatcaagatactggtggagctg
cgtaacggccgcggcgagatcgacgacatcgatcacctcggcaaccgtcgtgtgcgtagc
gtcggcgagctggcagagaaccagttccgtgccgggctggtgcgcgtcgagcgtgcggtc
aaggagcgcctgtcgcaggcggaatcggaaaacctgatgccgcatgacctgatcaatgcc
aagccggtatcggcagcagtgaaagagttcttcggctccagccagctgtcccagttcatg
gatcagaccaatccgctgtccgagatcacccacaagcgccgcgtttctgcgctgggtccg
ggcggactgacgcgcgagcgcgccggcttcgaagtgcgtgacgtgcaccccactcactat
ggccgggtgtgcccgattgaaaccccggaaggtccgaacatcggactgatcaactcgctg
gcgttgttcgcccggaccaacaagtatggcttcctggaaacgccttaccgcaaggtggaa
aacggcaaggtgacggatcagatcgaatatctgtccgccattgaggaaagtaaatatgtc
atcgcccaggccaacgcggagctggacaggaacggcaaattcaccagcgaaatcgtgtcg
tgccgtcacaaaaacgaattcgagctggccagcccggaccgtattcagtacatggacgtg
gcgccgtcacagatcgtctcggtggccgcttcgctgattccattcctcgagcacgacgac
gccaaccgtgcgttgatgggctcaaacatgcagcgtcaggccgtaccctgcctgcgtgcc
gagaagtccctggtcgggacgggtatcgagcgcaccgctgcggtggactccggcaccacg
gtgcaggcgcgtcgcggaggtgtggtggattacgtggacgcaggccgtatcgtggtgcgc
gtcagtgacgaggaaactaccgcaggtgaagtgggtgtggatatttacaccctgatcaaa
tacacccgttccaaccagaacaccaacatcaaccagcgtccgctggtcaaggtgggtgac
atgctggcgcgtggcgatgtcatcgccgatggcgcttccaccgacatgggcgaactggca
ctgggacaaaacctgctggttgcattcatgccgtggaacggcttcaacttcgaagattca
atcctgatttccgaacgcgtggtggcggaagaccgctatacctccatccatattgaagaa
ctgaccgtcgttgcgcgtgataccaagctgggaccggaagaaattacccgcgatatttcc
aatctgtccgagcgcatgctcgggcgtctggacgaatcgggtatctgctacatcggtgcc
gaagtggaagccggcgacgtgctggcgggcaaggtcacgcccaaaggtgaaacccagctt
acgccggaagaaaagttgctgcgtgccattttcggtgaaaaagcctccgacgttaaggac
acctcgctgcgcgtgccgtccggcatggcgggtacagtgatagacgtgcaggtattcacc
cgcgaaggcatcgaacgcgatgcgcgcgccaagcagatcatcgacaatcagctgtccgaa
tacaagaaggacatggcggatcgtatgcgcatcgtcgaagaagacgcattcgcccgcctg
cagcgcctgttgcagaacaaagtggttaaagggggtccgaaaaaactggccaaggacagc
aagatcacccaggactacctggatagcctgaatcgccacgactggtttgacatccgcctg
gctgacgatgaagccagccgccagatggaatcgctcaaggacagcctggatcaaaagcgc
atcgaatttgatgccatgtttgaagaaaagaagaaaaagctcactgccggcgacgagctg
ccgcccggcgtgcaaaagatggtgaaggtgtatgtggcagtcaagcgccgcctgcagccc
ggtgacaaaatggccggtcgccacggtaacaagggtgtggtctccaaaatcgtaccgatc
gaggacatgccattcatggcggacggtacgccgatggatattgtgctgaacccgctgggc
gtgccttcgcgtatgaacgtcgggcagattctggaaacccatctgggctgggctgccaaa
ggactgggcaagaagatcgacgacatgctgcaggcgcagaaaaaagtggcggaggtgcgc
aagttcctcacccagatatacaacgccacgggcaagtcggaagatctcgccagttttagc
gacgacgaaatcatcgagctggcgcgcaacctgcgcaatggcgtgccctttgccacgccg
gtgttcgacggcgccaacgaagccgagatcaaggacatgctggagctggcgggtctgccg
cgtagcggccagatcacgctgtgcgatggtcgcacgggtgaggcattcgatcggccggtt
acggttggttacatgcatgtgctcaaactgcaccacctggtggacgacaagatgcacgcc
cgctccactggcccttacagtctggtgacccagcagccgctgggcggcaaggcacagttc
ggcggccagcgctttggcgagatggaggtgtgggcgctggaagcctacggcgcggcttat
gtgctgcaggaaatgctcacggtgaaatccgacgacgtgaccggacgtaccaaggtgtac
gagaacatcgtcaagggcgagcacaagattgaagcgggtatgccggaatccttcaacgtg
ctggtgaaagagatccgttccctggcaatcgatattgatttggagcgttactga
DBGET
integrated database retrieval system
