Sulfuriferula plumbiphila: SFPGR_07090
Help
Entry
SFPGR_07090 CDS
T06621
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
splb
Sulfuriferula plumbiphila
Pathway
splb03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
splb00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
SFPGR_07090 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
splb03021
]
SFPGR_07090 (rpoC)
03400 DNA repair and recombination proteins [BR:
splb03400
]
SFPGR_07090 (rpoC)
Enzymes [BR:
splb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
SFPGR_07090 (rpoC)
Transcription machinery [BR:
splb03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
SFPGR_07090 (rpoC)
DNA repair and recombination proteins [BR:
splb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
SFPGR_07090 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
BBP03287
LinkDB
All DBs
Position
681216..685415
Genome browser
AA seq
1399 aa
AA seq
DB search
MKALLDLFKQVTQEEEFDAIKIGLASPDKIRSWSYGEVKKPETINYRTFKPERDGLFCAK
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTLSKVRRERMAHIELASPVAHIWFLKSL
PSRLGMVLDMTLRDIERVLYFEAYVVTDPGMTPLNRAQLLTEDDYLAKVEEYGDEFKASM
GAEGIRDLLKSIDIYSEAETLRNDLAKTGSDTKIKKLSKRLKVIEAFQKSGIKPEWMVLE
VLPVLPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELKAPEIIVRNEKRMLQ
EAVDSLMDNGRRGKAMTGANKRPLKSLADMIKGKGGRFRQNLLGKRVDYSGRSVIVVGPQ
LRLHQCGLPKKMALELFKPFIFHKLEVMGLATTIKAAKRMVETEEPVVWDILEDVIREHP
VMLNRAPTLHRLGIQAFEPTLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQMEC
RTLMLASNNVLSPANGEPIIVPSQDIVLGLYYMTRERVNARGEGMMFADVDEVSRAYESR
QVELNARVTVRIKEAYYDEQGERAEKITRYETTVGRSLLSEILPIGLSFTHVNKILKKKE
ISRLINASFRRCGLRQTVIFADKLMYTGFTYATRGGMSICVDDMLVPTQKQDIISASEKE
VQEIEAQYTSGLVTQGERYNKVVDIWGRAGDQVAKAMMTQLGSEPVTTRDGKETTQESFN
AIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVTQDLVVIEDDCGTREGLVLKALVEGGEVIEPLRERVL
GRVTALDVIHPETGETVIDAGTLLDEDAVEHIEALGVDEVKVRTALTCDTRYGLCAKCYG
RDLGRGHLVNVGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAVASQLECKSAGVVNY
SPAMRYVTSAKGELIAIARSGEIIIMGDNGRERERHKVPYGALLSVKDGDKAKAGQILAT
WDPHTRPIITEYAGRVRFENVEEGATVAKQIDDVTGLSTLVVIDPKRRVGAAVKGLRPQV
KLLDANGKEVKMSGTETPVNITFQIGSIITVKDGQDVGVGEVLARIPQETSKTRDITGGL
PRVAELFEARSPKDAGVLAAVTGTVSFGKDTKGKQRLVITDFDGVAHEYLIPKEKHVTAH
DGQVVNKGEMIVDGPVDPHDILGLKGVEALSRYITDEVQDVYRLQGVKINDKHIEVIVRQ
MLRRVNVADAGDTRFIQGEQVERAELLAENERVLAEGKQPASFEYVLLGITKASLSTDSF
ISAASFQETTRVLTEAAIMGKKDDLRGLKENVIVGRLIPAGTGLAYHNTRRRQKLGEDMG
AETDFAEGEDSAAGSEQVA
NT seq
4200 nt
NT seq
+upstream
nt +downstream
nt
atgaaagcattgctcgacttattcaagcaggtcactcaggaagaagaattcgacgcgatt
aaaatcggcctcgcgtcgcctgacaaaattcgttcctggtcgtatggcgaagtcaaaaag
ccggagaccattaactatcgcaccttcaagccggagcgtgatggcttgttctgcgccaaa
atctttggcccggtaaaagattacgaatgcctgtgtggcaaatacaagcgcctcaagcac
cgtggggtgatttgcgagaagtgcggcgtggaagtcaccttgtccaaggtgcgtcgcgag
cgcatggcgcacatcgagctggccagcccggtggcgcatatctggttccttaaatccctg
ccgtcgcgtcttggcatggtgctggacatgaccctgcgcgacatcgagcgcgtcctctat
tttgaagcctacgtggtgaccgatccgggcatgaccccgctcaaccgcgcacagttgctg
accgaagatgactaccttgccaaggtcgaagaatacggtgacgagttcaaggccagcatg
ggtgctgaaggtattcgtgacctgctcaagagcattgatatctacagcgaggcagaaacg
ctgcgcaacgatctggccaagacaggctccgacaccaagatcaagaagctgtccaaacgc
ctcaaggtgatcgaggcgttccagaaatccggtatcaaaccggaatggatggtgctggaa
gtgctgcctgtgctgccgcccgagctgcgcccgctggtgccgctggatggcggccgcttc
gccacctccgacctgaatgacctgtaccgccgcgtgattaaccgtaacaaccgcttgaag
cgtttgctcgaactcaaggcacctgaaatcatcgtgcgcaacgagaaacgcatgttgcag
gaagcggtggattcgttgatggataacggccgccgcggcaaggccatgaccggtgccaac
aagcgcccattgaaatcgctggccgacatgatcaagggcaagggcggtcgcttccgccag
aacctgctgggcaaacgcgtcgactactcgggccgttccgtgatcgtggtggggccgcag
ctgcgcctgcaccagtgcggtctgcccaagaaaatggcgctggaactgttcaagccgttc
attttccacaagctggaagtgatggggctggcaaccaccatcaaggctgcaaaacgcatg
gtggaaaccgaagaaccggtggtatgggacatcctcgaagacgtcattcgcgaacatccg
gtgatgttgaaccgcgcaccgacactgcaccgcctcggcattcaggcattcgaaccgacg
ctgatcgagggcaaggccatccagttgcacccgctggtgtgcgcggcgtttaatgccgat
ttcgacggcgaccagatggcggtgcacgtgccgctgtcgctggaagcccagatggagtgc
cgcaccctgatgctggcctccaataacgtgctgtcgcccgccaacggcgaaccgatcatc
gtgccgtcgcaggatattgtgctggggctgtactacatgacccgcgagcgtgtgaatgcg
cgcggcgagggcatgatgtttgccgacgtggacgaagtgtcgcgtgcttacgagtcgcgc
caggtggagctgaacgccagggtgacagtgcgtatcaaggaagcctactacgacgagcag
ggcgaacgcgcggaaaaaattacccgctatgaaaccaccgtgggtcgttcgctgctatct
gaaattctgccgatcggcctgtcgtttacccacgtcaacaagatactcaagaagaaagaa
atttccaggctcatcaacgccagcttccgtcgctgcggcctgcggcagacggtgattttt
gccgacaagctgatgtacaccggctttacctatgctacccggggcggcatgtcgatctgc
gtggatgacatgctggtgccgacgcagaagcaggacatcatcagcgcctccgaaaaggaa
gtgcaggaaatcgaggcgcaatacacctccggtctggtgacccagggtgagcgctacaac
aaggtggtggacatctgggggcgcgctggcgatcaggtggccaaggccatgatgacgcaa
ttgggcagcgaaccggtaaccacgcgtgacggcaaggaaaccacgcaagagtcgttcaac
gccatctacatgatggccgattccggcgcgcgtggctcggctgcgcagattcgccagctg
gcgggaatgcgcggcctgatggcgaaaccggacggctctatcatcgagacgccgattacc
gcgaatttccgcgaaggcctcaacgtgctgcagtatttcatctcgactcacggcgcgcgt
aaaggtctggccgatacggcactgaagactgccaactcgggctacctgacccgccgtctg
gtggacgtgacccaggacctggtggtgatcgaggacgattgcggcacgcgtgaaggtctg
gtgctgaaggcgctggtggagggtggcgaggtaatcgagccgttgcgcgagcgtgttctg
ggccgcgtaaccgcgcttgacgtgattcatccggagaccggcgagacggtgattgatgcc
ggcaccctgctggatgaagatgccgttgagcatatcgaggcgttgggtgtcgatgaggtg
aaggtgcgtaccgcgctgacctgtgatacccgttacggcctgtgtgccaagtgctatggc
cgcgacctcggtcgcggccacctggtgaacgtgggcgaggcggtgggcgtcatcgctgcg
cagtccattggcgagccgggcactcagctcaccatgcgcaccttccacatcggtggcgca
gcctcgcgtgctgccgttgccagccagctggaatgcaaatccgccggtgtggtgaattac
agccccgcgatgcgttatgtcaccagcgccaaaggcgaactgatagccattgcgcgcagc
ggcgagatcatcatcatgggcgacaatggtcgcgaacgtgagcgccacaaggtaccttac
ggtgcgctactcagcgtcaaggatggtgacaaggcaaaagccggccagatcctggccacc
tgggacccgcacacccgccccatcattactgaatatgccggccgcgtgcgttttgaaaac
gtggaagaaggcgccacggtcgccaaacagattgatgatgtgacgggtttgtccacgctg
gtggtgattgatccgaagcgccgcgttggtgcagccgtcaaaggtctgcgcccgcaggtc
aaattgcttgacgccaacggcaaagaagtgaaaatgagcggcactgaaacgccggtcaat
atcaccttccagatcggctccattattaccgtgaaagatggtcaggacgttggcgtgggc
gaagtgctggcgcgtattccgcaagaaacttcgaagacccgcgatattaccggtggtctg
ccgcgcgtggctgagctgtttgaggcacgctcacccaaggacgccggcgtgctggccgcg
gtcaccgggacggtttcgttcggcaaggataccaagggcaagcagcgtctggtcattacc
gactttgacggtgttgcgcatgaatacctgattccgaaagaaaaacacgtcactgcccac
gatggtcaggtggtcaacaagggcgagatgatcgtggatggtccggttgatccgcatgac
atcctgggcctgaagggcgtggaagcattgtcgcgttacattaccgacgaggttcaggat
gtgtaccgcttgcagggtgtgaaaatcaacgacaagcacatcgaagtcatcgtccggcag
atgttgcgccgggtgaatgtggccgatgccggcgatacccgctttatccagggtgagcag
gtggaacgcgccgagttgctggctgaaaacgaacgcgtgctggccgaaggcaagcagccg
gctagtttcgaatacgtgctgctgggcatcaccaaggcatcgctgtctacggactcattt
atctctgcggcatctttccaggaaaccacgcgggtgctgacggaagccgccatcatgggc
aagaaagacgatctgcgcggtctcaaggagaacgtcattgtggggcgtctgattccggct
ggtacgggtctggcctatcacaacacccgccgccgccagaaactgggtgaggatatgggc
gcagaaacggactttgccgaaggcgaagacagcgcagcgggaagcgagcaggtggcttga
DBGET
integrated database retrieval system
