Sulfuriferula plumbiphila: SFPGR_14630
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Entry
SFPGR_14630 CDS
T06621
Symbol
rhlE-2
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
splb
Sulfuriferula plumbiphila
Pathway
splb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
splb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SFPGR_14630 (rhlE-2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
splb03019
]
SFPGR_14630 (rhlE-2)
Enzymes [BR:
splb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SFPGR_14630 (rhlE-2)
Messenger RNA biogenesis [BR:
splb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SFPGR_14630 (rhlE-2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
UvrD-helicase
HI1480
P-loop_SecA
DegT_DnrJ_EryC1
AAA_22
ERCC3_RAD25_C
CMS1
Sacchrp_dh_NADP
Motif
Other DBs
NCBI-ProteinID:
BBP04041
LinkDB
All DBs
Position
1409206..1410546
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AA seq
446 aa
AA seq
DB search
MSFASLGLSEEIVRAVTERGYTEPTPIQLQAVPAVLSGGDLLAGAQTGTGKTAGFVLPIL
HRLSDKAVKGPSEGRPPIRALILTPTRELAAQVEESVREYGKYLKLNSMMMFGGVNINPQ
IQKLRSRVDILVATPGRLLDHAQQQTVDLSRVEILVLDEADRMLDMGFIRDIKKIMALIP
RQRQTLLFSATFSDEIKTLADSLLNNPAMIEVARRNATAELISQKVYAVDRERKRELLTH
LIKEHNWFQVLVFTRTKHAANRLAEQLGKDGIPAMAIHGNKSQAARTRALKEFKDGSLQV
LVATDIAARGIDISELPHVVNFELPNVAEDYVHRIGRTGRAGSEGEALSLVCVDEHKLLA
DIARLTKRDLTAEILPGFEPDARIKPEPILNGSQRGNQPRGGGQGRTRAPGRPAGQPGSR
PAGSSGGGAKPAARAPALHRTGGRNR
NT seq
1341 nt
NT seq
+upstream
nt +downstream
nt
atgtcattcgcatccctcggcttgtccgaagaaatcgtccgtgctgttaccgagcgcggc
tataccgagcctaccccaatacagttgcaggccgttcctgccgtgctatccggcggtgat
ctgctggctggcgcgcagaccggtaccggcaagaccgccggttttgttttgcctatcctg
catcgcctctccgacaaggccgtcaaaggcccgtccgaaggccggccgccgattcgtgcg
ctgatcctcacccccacccgcgagctggcggcacaggtggaagaaagcgtgcgtgagtac
ggcaaatatctgaagctgaactcgatgatgatgttcggcggcgtcaacatcaacccgcaa
atccagaagctgcgcagccgtgtggatatcctggtggcgacgccggggcgcctgcttgac
catgcgcaacagcagacggtggatttgtccagggtcgaaattctggtgctggacgaagcc
gaccgcatgctggacatgggctttatccgcgacatcaagaaaatcatggcgttgatcccc
aggcagcgccagacgctgttgttttccgcgaccttctcggacgaaatcaagacgttggca
gacagcctgttgaacaacccggcgatgatcgaagtggcgcgccgcaacgcgactgccgag
ctgatttcgcaaaaagtctacgcggtggatcgcgagcgcaagcgcgaactgctcacccat
ctcatcaaggaacacaactggttccaggtgctggtatttacccgtaccaagcatgctgcc
aatcgactggcggagcagctcggcaaggacggcattcccgccatggcgatccacggcaac
aagagccaggcggcgcgtacgcgtgcgctgaaggaattcaaggacggcagcctgcaggtg
ctggtcgcgaccgacatcgccgcgcgcggcatcgatatcagcgaactgccgcacgtggtc
aacttcgagctgcccaatgtggccgaggattatgtacaccgcatcggccgtaccggccgc
gcgggcagcgaaggcgaagcgctgtcgctggtctgtgtggacgaacacaaactgctggcg
gatattgccaggcttaccaaacgtgatttaactgccgagattttgccaggcttcgaaccc
gacgcacgcatcaagccggagccgatactcaatggcagccagcgcggcaaccagccgcgt
ggcggcggacagggcaggacacgcgcaccgggcaggcccgctggtcaaccggggagccga
cctgccgggagtagcggcggcggtgcaaaacccgccgcgcgtgcgcctgcgctgcaccgc
acgggcggacgcaatcgctga
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