Sulfuriferula plumbiphila: SFPGR_15140
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Entry
SFPGR_15140 CDS
T06621
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
splb
Sulfuriferula plumbiphila
Brite
KEGG Orthology (KO) [BR:
splb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
splb03009
]
SFPGR_15140 (rlmD)
Enzymes [BR:
splb01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
SFPGR_15140 (rlmD)
Ribosome biogenesis [BR:
splb03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
SFPGR_15140 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
Methyltransf_25
RrnaAD
TRM5-TYW2_MTfase
PCMT
MTS
Methyltransf_11
Cons_hypoth95
Methyltr_RsmB-F
Methyltransf_32
TRAM
Methyltransf_15
Methyltransf_12
Methyltransf_23
UPF0020
Methyltrans_SAM
Methyltransf_4
TPMT
PrmA
Motif
Other DBs
NCBI-ProteinID:
BBP04092
LinkDB
All DBs
Position
complement(1460601..1461905)
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AA seq
434 aa
AA seq
DB search
MNLTQPTLVIESLNHEGRGVAHRDGKAIFVDGALTGETVAYSVYRKKDTFEMAQATRILR
ASPARVQPRCKHFGVCGGCSLQHMEPSAQIAAKQRVLEDNLAHIGKVKAETMLSPIHGPA
WGYRSRARLSVRMVEKKGGVLVGFHERKSSFVAEMTSCDVLPPRISALIPRLRELIMQLT
IRDRLPQIEVAATDTVDVLVIRHMAPLAEADQALLRSFADAHHIQWWLQSKGPDTIIPFY
PLDAPELAYTLPEFNLVMPFRPSEFTQVNTAVNPVLMRRAMQLLDPQPSERIVDMFCGLG
NFTLPIARRAKHVVGIEGSKELVARARQNAERNAIHNTEFRVENLFGISAEHLAALGHFD
KMLIDPPRDGAVELVKSLGLDAPRRIVYVSCSPATLARDAAILVHTKGYRLRSAGIANMF
PHTAHVESIAVFER
NT seq
1305 nt
NT seq
+upstream
nt +downstream
nt
atgaacctcacccaacccaccctggttatcgaatccctcaaccatgaaggccgcggcgtc
gcccatcgcgacggcaaggccattttcgtggacggcgcgctcaccggcgagacggttgcc
tactcggtgtaccgcaaaaaggacaccttcgagatggcgcaggccacccgcatcctgcgc
gcgagcccagcgcgcgtgcagccgcgctgcaagcacttcggcgtatgcggcggctgcagc
ctgcagcacatggaaccctcagcgcagatcgccgccaagcaacgcgtactggaagacaac
ctggcccacatcggcaaggtcaaggctgaaaccatgctgtcgcccatccacggcccggcc
tggggctaccgcagccgggcgcgcctgtcggtacgcatggtggaaaagaaaggcggcgtg
ctggtcggatttcacgaaaggaaaagcagctttgtcgccgaaatgaccagttgtgacgtg
ctgccgccgcgcatttctgcgctcattccgcggctgcgcgagctgatcatgcaactgacg
attcgcgaccgtctgccgcagatcgaggtggccgccaccgataccgtggacgtactggtc
atccgccacatggcgccgcttgccgaagccgaccaagccctgctgcgcagcttcgccgac
gcccaccatatccagtggtggctgcaatccaaggggccggacaccatcatcccgttctac
ccgctggacgcgccggagctggcctatacgctgcctgaattcaatctggtgatgccattc
cgtccgagcgagttcacccaggtcaatacagcggtgaatccggtcctgatgcggcgcgcc
atgcagttgctcgacccgcagcccagcgagcgcatcgtcgacatgttctgtggtctgggc
aacttcacgctgcccatcgcgcgtcgtgccaaacacgtggtgggcatcgagggcagcaag
gaactggtcgcacgcgcacgccagaacgccgaacgcaacgccattcataacaccgaattc
agggtggaaaatctgttcggaatcagtgcggaacatctggccgcactcggccacttcgac
aagatgctgatcgacccgccccgcgacggcgccgtggagctggtcaaatccctggggctg
gacgccccccggcgcatcgtttacgtctcgtgcagtcccgccacgctggcccgcgacgcc
gccatcctggtgcacaccaagggataccggttgcgttcggcgggcatcgccaacatgttt
ccgcataccgcacacgtggaatcgatcgcggtgtttgagcgctga
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