Sulfuriferula plumbiphila: SFPGR_30090
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Entry
SFPGR_30090 CDS
T06621
Symbol
rpoN_1
Name
(GenBank) RNA polymerase sigma-54 factor
KO
K03092
RNA polymerase sigma-54 factor
Organism
splb
Sulfuriferula plumbiphila
Pathway
splb02020
Two-component system
splb02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
splb00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
SFPGR_30090 (rpoN_1)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
SFPGR_30090 (rpoN_1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
splb03021
]
SFPGR_30090 (rpoN_1)
Transcription machinery [BR:
splb03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
SFPGR_30090 (rpoN_1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
Motif
Other DBs
NCBI-ProteinID:
BBP05587
LinkDB
All DBs
Position
2935308..2936747
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AA seq
479 aa
AA seq
DB search
MKHSLQLKLSQHLTLTPQLQQSIRLLQLSTLELNQELEQILQDNPLLERVDNLDDGETHI
NGSDPELRSEAPTETSSVADSSPEPEARELADIDWESEGSYGSPDDDDEDREYQQPSTET
TSLRDHLVWQLNLTPLSERDKRLVLLLIDALDEGGYLSQSLQDIVEMLPPELEIELDDLQ
IALKHLQNLEPTGVGARNLSECLTLQLLALPADTPHRDCALTIAGTHLSELATRDYIGLK
RKLHCDDDELRNARDLITHLNPKPGAGFGESDTRYIVPDVIVKKVKGLWVASLNPDAMPK
LRINRMYADILSRNRDSGHQHLASQMQEAKWLIKNVMQRFETILKVSQSIIDRQRHFFEH
GEVAMRPLVLREIAETVELHESTISRVTTQKFMMTPRGIYELKYFFGSHVSTETGGACSA
TAIRALIKQLVAAENSKKPLSDGQIADLLGQQGIVVARRTIAKYRESLQISPASQRKSL
NT seq
1440 nt
NT seq
+upstream
nt +downstream
nt
atgaaacacagtttacaactcaagctctcacagcatctcacgttgacgccgcaactgcag
cagtccatccggctgttgcagttgtccacgcttgagttgaaccaggaactggagcagata
ctccaggacaacccgttgctggaacgcgtggacaatctggatgacggcgagactcacatc
aatggcagcgaccccgagctgcgcagcgaagcgcccaccgaaaccagcagcgtggccgat
agctccccggagccagaggcacgcgaactggccgacatcgactgggaaagcgaaggcagc
tacggctcgcccgacgatgacgacgaagaccgcgagtatcagcaaccctccaccgagacc
acttcgctgcgcgatcatctggtctggcagcttaatctcaccccgctgtcggagcgcgac
aagcgtctggttctgctgttgatcgatgcgctggacgaaggcggctacctgtcgcaaagc
ctgcaggacatcgtggaaatgttgccgccggagctggaaatcgagctcgacgacttgcag
atcgcgctcaaacatttgcaaaatctggaacccaccggcgtcggcgcgcgcaatctgtcc
gaatgcctcaccctccagctgctggcgctgccagcggataccccccatcgcgattgtgca
ctgaccatagcgggcacccatttgagtgagttggcgacgcgcgattacattgggctcaaa
cgcaaactgcactgcgatgatgacgaactgcgcaatgcacgtgacctgattacccacctc
aaccccaagccgggtgccggttttggcgaatccgatacgcgctacatcgtgccggatgtc
atcgtgaaaaaagtcaagggcctgtgggtggcaagcctcaaccctgacgccatgcccaag
ctgcgcatcaaccgcatgtacgccgacatcctgtcgcgcaaccgcgacagcggccaccag
cacctggccagccagatgcaggaagccaaatggctgatcaagaacgtcatgcagcgtttt
gaaaccattctcaaggtgtcgcaaagcattattgaccgccagcgccatttcttcgagcac
ggcgaggtggccatgcgcccgctggtgctgcgcgagattgccgagaccgtggaactgcac
gaatccaccatttcgcgcgtcaccacgcaaaaattcatgatgacgccgcgcggcatttat
gaacttaaatactttttcggcagtcacgtcagtacggagacgggtggcgcctgttcggca
actgccatccgcgcactcatcaaacaactggtagccgcagaaaacagcaagaaaccccta
tctgacgggcagattgcagacctgcttggccagcaaggcatcgtggtggcacgccgcacc
atcgccaaataccgggaatccctgcaaatatcgcccgccagtcagcgcaagtcgctctaa
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