Sphingomonas sp. LK11: AV944_00170
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Entry
AV944_00170 CDS
T04954
Name
(GenBank) peptidoglycan-binding protein
KO
K21470
L,D-transpeptidase YcbB
Organism
splk
Sphingomonas sp. LK11
Brite
KEGG Orthology (KO) [BR:
splk00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
splk01002
]
AV944_00170
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
splk01011
]
AV944_00170
Peptidases and inhibitors [BR:
splk01002
]
Cysteine peptidases
Family C82
AV944_00170
Peptidoglycan biosynthesis and degradation proteins [BR:
splk01011
]
Peptidoglycan biosynthesis and degradation
Transpeptidase
AV944_00170
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
YkuD
Scaffold
PG_binding_1
CBP_BcsO
Motif
Other DBs
NCBI-ProteinID:
APX64526
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All DBs
Position
complement(33784..35274)
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AA seq
496 aa
AA seq
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MAAGSMIATPLLAQVAPPPVMVPTTPQQIQPPAAQIQMAPPATVQPLPQAAPAVAIPALS
EAQAGQLATLIAGGEVAQGLRQGPPRDLTTLSPAALTRVALDYAHAVHVGRLDAADFTKD
WGIRPQPYDPAPGFAEAVRRDRLSAWIASLPPPYAGYDALVKGLARYRAMAAAGGWSSLP
AATINFGASGPQVLALRKRLAMEDPAVSATGDRFDEDLLAAVRRAQRRYGLNPVGTVGTQ
TIAVLNVPVAQRIRQIMANMERWRWLPQQLEAKRVQVNIAAAVLTVFDGDNPVMSMKAVT
GRPGNETPMLVSTIRSIVLNPPWNVPSSIANKELWPKEKANPGYLKRAGFRIIDNGDGSK
RLQQSSEKSALGRFKFDFPNDFAVYLHDTPAQSGFSKFDRLASHGCVRLEKPADLAALML
KTTPEWQPEQVDAVLASGKTVRASMAEPVAVYLLYWTAFANADGQVGFREDPYSWDAQLA
TKIEARSAERAQATKD
NT seq
1491 nt
NT seq
+upstream
nt +downstream
nt
ttggcggccgggtccatgatcgcgacgccgctgctggcgcaggtcgcgccgccgccggtg
atggtccccacgacgccgcaacagattcagccccccgctgcgcagatccagatggcaccg
cccgccaccgtgcagccgctgccgcaagccgcccccgccgtggcgatccccgctttgtcg
gaggcgcaggccgggcagctcgcgacgctgatcgccgggggagaggtggcgcaggggctg
cgtcaagggccgccacgcgacctgaccaccctgtcgcccgccgcgctgacccgcgtcgcg
ctggattatgcccatgcggtgcatgtcgggcggctggatgcggccgacttcaccaaggac
tggggcatccgtccgcagccctacgaccccgcgcccggctttgcggaggcggtgcggcgt
gaccggctgtcggcctggatcgcctcgctgccgccgccctatgcgggctatgacgcgctg
gtgaaggggctggcccgctatcgcgccatggcggcggcggggggctggtcgtcgctcccg
gcggccaccatcaactttggcgcaagcggaccgcaggtgttggcgcttcgcaagcggctg
gcgatggaagacccggcggtcagcgccacgggcgacaggttcgacgaggatctgctggcg
gcggtgcggcgggcgcagcgtcgttacggcctgaacccggtcggcaccgtcggcacccag
accattgccgtgctgaacgtgccggtggcgcagcgcatccgccagatcatggcgaatatg
gaacgctggcgctggttgccgcagcagttggaggccaagcgcgtccaggtgaacatcgcc
gccgccgtgctgaccgtgttcgatggcgacaatccggtcatgtcgatgaaggcggtgacg
ggccgtccgggcaacgagactccgatgctggtgtcgacgatccgcagcatcgtgctgaac
ccgccctggaacgtgcccagctcgatcgccaacaaggagctgtggcccaaggaaaaggcc
aatcccggctatctgaagcgcgcggggttccgcatcatcgacaatggcgacggcagcaag
cggttgcagcaatcgtcggaaaagagcgcgctgggtcggttcaagttcgacttccccaac
gattttgcggtctatctgcacgacacgcccgcccagtcgggcttttccaagttcgaccgg
ctggcgagccatggctgcgtccggctggaaaagcccgccgacctcgccgcgctgatgctg
aagaccacgcccgaatggcaacccgagcaggtcgatgccgtcctcgcctcgggcaagacg
gtgcgcgccagcatggccgagccggtggcggtctatctgctctactggaccgctttcgcg
aatgccgatgggcaggtgggattccgcgaggatccctatagctgggacgcgcagctcgcg
accaagatcgaggcccgctcggccgagcgcgcccaggcgaccaaggactaa
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