Sphingomonas sp. LK11: AV944_01090
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Entry
AV944_01090 CDS
T04954
Name
(GenBank) DNA polymerase III subunit epsilon
KO
K10857
exodeoxyribonuclease X [EC:3.1.11.-]
Organism
splk
Sphingomonas sp. LK11
Pathway
splk03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
splk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
AV944_01090
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
splk03400
]
AV944_01090
DNA repair and recombination proteins [BR:
splk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
AV944_01090
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
Fic-like_C
Motif
Other DBs
NCBI-ProteinID:
APX64668
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All DBs
Position
228902..229663
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AA seq
253 aa
AA seq
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MQRPQPQIIRVIDLETTGQAPPTHGVCEIGWQDVALGKDGRWELEGEGGSILVNPGRPIP
PITQAIHHILDEQVADAPWWHDVARRVLDPWPRRLALAAHRADFEQQYCTPAMTQSADWI
CTWKCALRLWPDSPSFSNQVLRYWRKPHGLIHERGLPIHRAFPDAYVTAHHLRDQLNEAS
LAQLLEWSRSPGLLPRVRYGPDRGKDWREIDEDSLIGFLSDRDPDVRFTAETEMARRRGG
GHVGRPSPQELLL
NT seq
762 nt
NT seq
+upstream
nt +downstream
nt
atgcagcgtccccagcctcagatcatccgcgtcatcgacctggagaccaccggacaggcc
ccgcccacgcacggcgtgtgcgagatcggctggcaggatgtcgcgctgggcaaggacggc
cgctgggagctggagggcgaaggcggcagcatcctggtcaatcccggccgccccattccg
ccgatcacccaggccatccatcatatcctggacgaacaggtcgccgacgctccctggtgg
catgacgtcgcgcgccgcgtgctcgacccctggccgcgccgcctggcgctcgcggcgcat
cgcgccgatttcgagcagcaatattgcaccccggccatgacccagtcggccgactggatc
tgcacctggaaatgcgcgctgcgcctgtggcccgacagccccagcttctccaaccaggtg
ttgcgttactggcgcaagccgcacggactgatccatgagcgcggcctgcccatccaccgc
gccttcccggacgcctatgtcaccgcgcatcacctgcgcgaccagctgaacgaggcgagc
ctggcgcagctgctggaatggtcgcgcagtccggggctgttgccgcgtgtccgctacggc
cccgatcgcggcaaggactggcgcgagatcgacgaggactcgctgatcggcttcctcagc
gaccgcgatccggatgtccgattcaccgccgagaccgagatggcgcggcggcgtggcggc
ggccatgtcgggcggcccagcccccaggaactgctgctgtaa
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