Sphingomonas sp. LK11: AV944_01255
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Entry
AV944_01255 CDS
T04954
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
splk
Sphingomonas sp. LK11
Pathway
splk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
splk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AV944_01255
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
splk03019
]
AV944_01255
03400 DNA repair and recombination proteins [BR:
splk03400
]
AV944_01255
Enzymes [BR:
splk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AV944_01255
Messenger RNA biogenesis [BR:
splk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AV944_01255
DNA repair and recombination proteins [BR:
splk03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
AV944_01255
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HRDC
DEAD
RQC
Helicase_C
RecQ_Zn_bind
ResIII
DNA_pol_A_exoN
AAA_30
Motif
Other DBs
NCBI-ProteinID:
APX64699
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All DBs
Position
260379..262148
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AA seq
589 aa
AA seq
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MVADPLAKLHEVFGYNQFRGVQEQVVDRVLARQRTLAVMPTGAGKSLCYQLPAVMMDGCC
VVVSPLIALMHDQLRAAEAVGIRAATLTSVDQNRAETVARFRDGQLDLLYVAPERASSGH
FRELLGSAPLSLFAIDEAHCVSEWGHDFRPDYRLLEPLMDAFPEVPRLALTATADAHTRA
DIAKQLGIPTEGMIVSGFDRPNIRYAISPKANVNLQIARVVADTPGPGIVYAQTRAATEK
LAEALARTGRPVRAYHAGLDPAVRAKNQADFVASEDMVICATVAFGMGIDKPDVRFVAHA
GLPKSIEAYYQETGRAGRDGDPSVAHLFWGADDFARARQRMAEVEPERQAGERARLSALG
ALVETGGCRRRILLRHFGEELAEDCGNCDNCLGSPDAVDATTVAQKFLSAVFRTGQMFGA
GYIEQVLTGQSTERSLMNGHEALSVWNIVSGDEVALLKPVHRALLLRDALRTNHHGGLEF
GPAARALIKGEARLSLVVPPKRERKGRRAAPVAANPADNPLFEALRAKRRELAQEAGVPP
YVIFHDSVLRDMAAQRPTSRAALSLLSGIGARKLDAYGEAFLAVIREAD
NT seq
1770 nt
NT seq
+upstream
nt +downstream
nt
atggtcgccgacccccttgccaagctccacgaagttttcgggtacaaccagttccggggt
gtgcaggaacaggtggtcgaccgcgtgcttgcgcggcagcggacgctggcggtcatgccg
acgggcgcgggcaagtcgctctgctaccagttgcccgccgtgatgatggacgggtgctgc
gtcgtggtcagcccgctgattgctttgatgcacgaccagctgcgcgccgccgaggcggtc
ggcatccgcgccgccacgctgaccagcgtcgaccagaaccgcgccgagacggtcgcccgt
ttccgcgacgggcagctcgacctgctctatgtcgcgcccgagcgtgcctcatcggggcat
tttcgcgagttgctcggctccgcgccgctcagcctgttcgcgatcgacgaggcgcactgc
gtcagcgaatgggggcatgacttccgccccgactatcgcctgctcgaaccgctgatggac
gcctttccggaggtgccccggctcgcgctgaccgcgaccgccgatgcgcatacccgcgcc
gacatcgccaagcagctgggcatccccaccgaggggatgatcgtctcgggcttcgaccgg
cccaatatccgctatgcgatcagccccaaggcgaatgtgaacctgcagatcgcgcgggtg
gtcgccgacacgcccggccccggcatcgtctatgcccagacgcgcgcggcgaccgagaag
ctggccgaggcgctggcccggaccggtcgcccggtgcgcgcctatcatgccgggctggac
cccgccgtgcgcgcgaagaaccaggccgatttcgtggcctccgaagacatggtgatctgc
gccaccgtcgccttcggcatggggatcgacaagccggacgtccgcttcgtcgcgcatgca
ggcctgcccaagtcgatcgaggcctattatcaggaaaccggccgtgcgggccgcgacggc
gacccctcggtcgcgcatctcttctggggtgccgacgatttcgcccgtgcgcggcaacgc
atggccgaggtcgagccggagcgacaggcgggcgagcgcgcacggctgtcggcgctgggt
gcgctggtcgagacggggggatgccgccgccgcatcctgctgcgccatttcggcgaggaa
ctggccgaggactgcggcaattgcgacaattgcctggggtcgcccgatgcggtcgatgcg
acgaccgtagcccagaaattcctctcggcggtgttccgcaccggccagatgttcggcgcg
ggctatatcgagcaggtgctgaccggccagtcgaccgagcgcagcctgatgaacgggcat
gaggcgctgtcggtctggaacatcgtctcgggcgacgaggtggcgctgctgaagcccgtc
caccgggcactgctgctgcgcgatgccttgcgcaccaatcatcatggcggactcgagttc
ggccccgccgcgcgcgcgctgatcaagggcgaggcgcggctgtcgctggtcgtgccgccc
aagcgcgaacgcaagggccgtcgcgccgcgccggtcgccgccaatccggcggacaatccg
ctgttcgaggcgctgcgcgccaagcgtcgcgagctggcgcaggaggcgggggtgccgcct
tacgtgatcttccacgactcggtgctgcgcgacatggcggcgcaacgtccgaccagccgg
gcggcgctgtcgttgctgtcggggatcggcgcgcgcaagctggatgcttatggcgaagcg
tttctggcggtgatccgcgaggcggactaa
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