Sphingomonas sp. LK11: AV944_01295
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Entry
AV944_01295 CDS
T04954
Name
(GenBank) uracil-DNA glycosylase
KO
K03648
uracil-DNA glycosylase [EC:
3.2.2.27
]
Organism
splk
Sphingomonas sp. LK11
Pathway
splk03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
splk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
AV944_01295
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
splk03400
]
AV944_01295
Enzymes [BR:
splk01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.27 uracil-DNA glycosylase
AV944_01295
DNA repair and recombination proteins [BR:
splk03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
AV944_01295
Prokaryotic type
AV944_01295
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UDG
Motif
Other DBs
NCBI-ProteinID:
APX64705
LinkDB
All DBs
Position
266902..267597
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AA seq
231 aa
AA seq
DB search
MSDVRLHESWLSVLRPEFDEPYMKALKTFLGQEREGGQRVFPRPSEWFRALDLTPLDQVR
VVILGQDPYHGEGQAHGLAFSVQPGVRPPPSLVNIYKEMATDLGIAPPSHGLLDHWARQG
VLLLNSVLTVRMGQAASHQGRGWERFTDAVIRAVAAKPEPVVFILWGAYAQKKAGFVREM
GEGRHCVLTSVHPSPLSARGGFFGSKPFSKANAFLAEHGQPPIDWALPPLP
NT seq
696 nt
NT seq
+upstream
nt +downstream
nt
atgagcgacgttcgattgcacgaaagctggctgtcggtgctgcggcccgaattcgacgaa
ccctatatgaaggcgctgaagaccttccttggccaggagcgcgagggcggtcagcgcgtc
ttcccccgcccgtccgagtggttccgcgcgctggacctgacgccgctggatcaggtgcgc
gtcgtcatcctggggcaggacccctatcatggcgaggggcaggcgcatggcctggccttc
tcggtccagcccggcgtccggccgccgcccagcctggtcaatatctacaaggagatggcg
accgacctcggcatcgcgccgccctcccatggcctgctcgaccattgggcgcggcagggg
gtgctcctgctcaactcggtgctgaccgtgcgcatgggccaggccgcctcgcatcagggg
cgcggctgggagcggtttaccgacgccgtgatccgcgccgtcgccgccaagcccgagccg
gtcgtcttcatcctgtggggtgcctatgcccagaagaaggcgggcttcgtacgcgagatg
ggcgaagggcggcactgcgtcctgacctcggtccacccctcgcccttgtcggcgcggggc
ggttttttcgggtcaaagcccttttccaaggccaatgcctttctggccgaacatggccag
ccgccgatcgactgggcgctgccgccgctgccatga
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