Sphingomonas sp. LK11: AV944_02320
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Entry
AV944_02320 CDS
T04954
Name
(GenBank) DNA polymerase III subunit epsilon
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
splk
Sphingomonas sp. LK11
Pathway
splk03030
DNA replication
splk03430
Mismatch repair
splk03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
splk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
AV944_02320
03430 Mismatch repair
AV944_02320
03440 Homologous recombination
AV944_02320
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
splk03032
]
AV944_02320
03400 DNA repair and recombination proteins [BR:
splk03400
]
AV944_02320
Enzymes [BR:
splk01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
AV944_02320
DNA replication proteins [BR:
splk03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
AV944_02320
DNA repair and recombination proteins [BR:
splk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
AV944_02320
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
Rv2179c-like
RNase_H_2
Motif
Other DBs
NCBI-ProteinID:
APX64873
LinkDB
All DBs
Position
complement(478110..478805)
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AA seq
231 aa
AA seq
DB search
MREIVFDTETTGFKFSEGDRLVEIGCVELVNRVETGRTYHAYFNPERSMPAEAQAVHGLS
DAFLKDKPVFSAGVAEFLDFIGDAPLIAHNATFDFGFINGELGVLGFPPVCEKTRMVDTL
AIARSKHPGAKHTLDALCSRYGIDRSHRVLHGALLDAQLLAQVYVELMGGRQIGLGLLAE
ASADTGPVIVARAPAKVRPPRIFRPSEAELAAHAAFLKGITDPVWGAEASG
NT seq
696 nt
NT seq
+upstream
nt +downstream
nt
atgagagagatcgttttcgacaccgaaacgacagggttcaaattttcggaaggcgaccgg
ctggtcgaaatcggctgtgtcgaactggtcaaccgggtcgagaccgggcgcacctatcac
gcctatttcaatcccgaacggtcgatgcctgccgaggcgcaggcggtccacggattgtcc
gacgcgttcctgaaggacaagccggtcttttcggccggggtggccgagtttctggacttc
atcggcgacgcgccgctgatcgcgcacaacgcgaccttcgacttcggcttcatcaatggc
gagctgggcgtgctgggcttcccgccggtctgcgagaagacgcggatggtcgacacgctg
gcgatcgcgcgcagcaagcatcccggcgccaagcatacgctcgacgcgctctgctcgcgc
tatggcatcgaccgctcgcaccgtgtgctgcacggcgcgctgctcgacgcgcagctgctg
gcgcaggtctatgtcgagttgatgggcgggcggcagatcggcctgggcctgctcgccgag
gcgagcgcggataccgggccggtgatcgtcgcccgcgcgcccgcaaaagtccgcccgccg
cgcatcttccgaccgagcgaggcggaacttgccgcccatgcggcgtttctaaagggcata
accgatccggtttggggggccgaggcgtccggttga
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