Sphingomonas sp. LK11: AV944_02355
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Entry
AV944_02355 CDS
T04954
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
splk
Sphingomonas sp. LK11
Pathway
splk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
splk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AV944_02355
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
splk03021
]
AV944_02355
03019 Messenger RNA biogenesis [BR:
splk03019
]
AV944_02355
Transcription machinery [BR:
splk03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
AV944_02355
Messenger RNA biogenesis [BR:
splk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
AV944_02355
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
AAA_22
ATPase_2
S1CSD-TOTE-2
Spore_III_AA
NACHT
GpA_ATPase
AAA_25
AAA_14
AAA
Fungal_virus_P2_C
Motif
Other DBs
NCBI-ProteinID:
APX64876
LinkDB
All DBs
Position
483738..484994
Genome browser
AA seq
418 aa
AA seq
DB search
MHLKDLKKKTPADLVQLAEELGVESASTLRKQDLLFAILKEQAEKGDQIMGLGTIEVLPD
GFGFLRSPEANYLAGPDDIYVSPNQVRKHGLRTGDTVEGEIRAPKDGERYFALTKLTSVN
FDDPEAVRHRVNFDNLTPLYPEQKLILDPADPTQKDKSARVIDIVSPQGKGQRTLIVAPP
RVGKTVMLQNIAKAITDNHPEVFLIVLLIDERPEEVTDMQRSVRGEVVSSTFDEPAQRHV
QVAEMVIEKAKRLVEHKKDVVILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRPKRF
FGAARNIEEGGSLSIIATALIDTGSRMDEVIFEEFKGTGNSEIVLDRKVADKRIFPAMDV
GKSGTRKEELLVEKDKLSKMWVLRRILMQMGTIDSMEFLLDKMKNSKTNEDFFDSMNQ
NT seq
1257 nt
NT seq
+upstream
nt +downstream
nt
atgcatctgaaagacctcaagaagaaaacccccgccgacctcgtgcagctggccgaggaa
ttgggggtcgaaagcgcgtccacgctgcgcaagcaggacctgctgttcgccatcctgaag
gagcaggcggagaagggcgaccagatcatgggcctgggcacgatcgaggtgctgcccgac
ggtttcggcttcctgcgctcgcccgaagccaattacctcgccggcccggacgacatctat
gtctcgcccaaccaggtgcgtaagcacggcctgcgcaccggcgatacggtggaaggcgag
atccgcgcgcccaaggatggcgaacgctatttcgcgctgaccaagctgaccagcgtcaat
ttcgacgatccagaggcggtccgccaccgcgtcaatttcgacaatctgacgccgctctat
cccgagcagaagctgatcctcgaccccgccgacccgacccagaaggacaagtcggcgcgt
gtcatcgatatcgtcagcccccagggcaagggccagcgcacgctgatcgtcgcaccgccg
cgcgtcggtaagacggtgatgttgcagaacatcgccaaggcgatcaccgacaaccatccc
gaagtcttcctgatcgtcctcctcatcgacgagcgtccggaagaagtcaccgacatgcag
cgctcggtgcgtggcgaggtcgtctcctcgaccttcgacgaaccggcacagcgccacgtc
caggtcgccgagatggtgatcgaaaaggccaagcgcctggtcgagcacaagaaggatgtc
gtcatcctgctcgactcgatcacccgtctgggtcgcgcctacaacaccgtcgtgccgtcg
tcgggcaaggtgctgacgggcggcgtcgatgcgaacgcgctccagcggcccaagcgcttc
ttcggtgcggcgcgcaatatcgaggagggcggttcgctctcgatcatcgccaccgcgctg
atcgacaccggtagccgcatggacgaggtcatcttcgaagagttcaagggcaccggcaac
tcggaaatcgtcctcgaccgcaaggtggcggacaagcgcatcttcccggcgatggacgtc
ggcaagtcgggcacccgcaaggaagagctgctggtcgagaaggacaagctgtccaagatg
tgggtgctgcgccgcatcctgatgcagatgggcacgatcgactcgatggagttcctgctc
gacaagatgaagaattcgaagaccaacgaggatttcttcgactcgatgaaccagtaa
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