Sphingomonas sp. LK11: AV944_02700
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Entry
AV944_02700 CDS
T04954
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
splk
Sphingomonas sp. LK11
Pathway
splk03030
DNA replication
splk03410
Base excision repair
splk03420
Nucleotide excision repair
splk03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
splk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
AV944_02700
03410 Base excision repair
AV944_02700
03420 Nucleotide excision repair
AV944_02700
03440 Homologous recombination
AV944_02700
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
splk03032
]
AV944_02700
03400 DNA repair and recombination proteins [BR:
splk03400
]
AV944_02700
Enzymes [BR:
splk01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
AV944_02700
DNA replication proteins [BR:
splk03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
AV944_02700
DNA repair and recombination proteins [BR:
splk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
AV944_02700
NER (nucleotide excision repair)
GGR (global genome repair) factors
AV944_02700
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
5_3_exonuc
DNA_pol_A_exo1
HHH_5
DprA_N
HHH
Motif
Other DBs
NCBI-ProteinID:
APX64926
LinkDB
All DBs
Position
complement(555490..558264)
Genome browser
AA seq
924 aa
AA seq
DB search
MPHLYLVDGSGYIFRAYHRLPPLTNKHGEPVGAVYGYTTMLWKLVDEINAADGPTHMAVV
LDKSSKTFRNEMYDQYKAHRPPPPPDLVPQFPMIRDATRAFSLPCIEEMGLEADDLIACY
ARAAMAQGWQVTIVSGDKDLMQLVEDGSLDMLDTMNNRRLGEAYVQEKFGVGPKQLGDVL
ALMGDSVDNVPGVPGVGPKTASKLIVEHGDLESVLAAAPEMKKGKLRDNLIEHAENARLS
KRLVTLECNAPLPQPLEELALHPTIPDAPLRAFLEHHGFRSLIAKMGQITDDAAPAPVAG
EAAPAAPMDDDEPCNLDGYTTVQDLATLDQWVADARHQGFVAIDTETSSTDATQAELVGV
SLCLAPNKACYIPLGHGGTDLLAEVPVQIPVAEALERIKALCEDPSVLKIGQNLKFDMIV
LGERGIAVAPHDDTIVMSFDLDAGLHGHGMDELAATHLSHTCLAFKEVVGTGKKQLGFHE
VDLKLATRYAAEDADVTLRLWKRFKARLPMEQATRVYEMVDRPLVPVIAGMERRGIKVDR
DRLSQLSTEFAGQIAALEGEIHAMAGTPFTIGSPKQLGEILFDRLGLKGGRKGKSGVYST
DVTELERLARDGGEAAEIVRKILEWRQLSKLKSTYTDALQAQINPKTGRVHTSYSLTGAQ
TGRLSSTEPNLQNIPIRTEVGRQLREAFIAEDGHVLIAADYSQIELRLAAHMADVPALRD
AFANGDDIHSLTAMELFGEVNRDTRGRAKTINFAILYGISRWGLAGRLDVSADEAQSMID
RYFERFPGINRYIAETLSSVREKGFTETLFGRKTHFPRIASRNQGERQGAERAAINAPIQ
GTSADIIKRAMVRMEPALAAAGLGHVRMLLQVHDELVFEAPEADAEAAGAVIREVMAGAA
EPAVSLSVPLGVEIGFGKSWGAAH
NT seq
2775 nt
NT seq
+upstream
nt +downstream
nt
atgccccatctctatctcgtcgacggctccggctatatcttccgcgcctatcaccgcctg
ccgccgctgacgaacaagcatggcgagccggtgggggcggtgtacggctatactaccatg
ctctggaagctggtggacgagatcaatgccgccgatgggccgacccatatggcggtggtc
ctcgacaagtcgtccaagaccttccgcaacgagatgtacgaccagtataaggcgcaccgg
cccccgcccccgcccgatctggtgccccagttcccgatgatccgcgacgccacccgcgcc
ttttcgctgccctgcatcgaggagatggggctggaggccgacgacctgatcgcctgttat
gcccgcgccgcgatggcgcaggggtggcaggtcacgatcgtctcgggcgacaaggacctg
atgcagctggtcgaggatggcagcctcgacatgctcgatacgatgaacaaccggcgtctc
ggcgaggcgtacgtccaggagaagttcggcgtcgggccgaagcagctgggcgatgtcctc
gcgctgatgggcgacagcgtcgataacgtgccgggcgtgccgggtgtcggccccaagacc
gcctccaagttgatcgtcgagcatggcgacctggaatccgtcctcgccgccgcgcccgag
atgaagaagggcaagctgcgcgacaacctgatcgaacatgccgagaatgcgcggctgtcg
aagcggctggtcacgctggagtgcaacgcgccgctgccgcagccgctggaggaactggcg
ctgcatccgaccatcccggatgcgccgcttcgcgcctttctggagcatcacggcttccgc
tcgctgatcgccaagatgggccagatcaccgacgatgccgcgcccgcccccgtcgccgga
gaagccgcgcccgccgcgccgatggacgatgacgagccgtgcaatctcgacggctatacc
acggtgcaggacctggcgacgctcgaccaatgggtggccgacgcgcgtcatcagggtttc
gtcgcgatcgacaccgagaccagctcgaccgacgcgacccaggccgaactggtcggggtc
agcttgtgcctggcgcccaacaaggcgtgttatatcccgctgggccatggcggcaccgac
ctgttggccgaggtgccggtacagattccggtcgccgaagccttggagcggatcaaggca
ctgtgcgaggacccgtcggtcctgaagatcggtcagaatctgaagttcgacatgatcgtg
ctgggcgagcgcggcatcgccgtcgcgccgcatgacgacaccatcgtcatgagcttcgac
ctcgacgccgggcttcacggccacggcatggacgaactggccgcgacgcatctgtcgcac
acctgcctcgccttcaaggaggtggtcggcaccggcaagaaacagctcggcttccacgag
gtcgatctcaaactcgccacccgctacgccgctgaggatgccgacgtcacgctgcggttg
tggaagcggttcaaggcgcggttgcccatggagcaggcgacgcgcgtctacgagatggtc
gaccgcccgctcgtccccgtgatcgcgggcatggagcggcgcgggatcaaggtcgatcgc
gaccgcctctcgcaactctccaccgagttcgccggacagattgccgcgctcgagggcgag
attcatgcgatggcgggcacccccttcaccatcggcagccccaagcagctcggcgaaatc
ctgttcgaccgcctcggcctgaagggcgggcgcaaggggaagtcgggcgtctattcgacc
gacgtgaccgaactcgaacgcctggcgcgcgacggcggcgaagcggcggagatcgtgcgc
aagatcctggaatggcgccagctctccaagctgaagagcacctataccgacgcgctccaa
gcgcagatcaaccccaagaccggccgcgtccacaccagctacagcctgaccggcgcacag
accggccgcctgtcctcgaccgagccgaaccttcagaacatcccgatccgcaccgaggtg
gggcggcagttgcgcgaggcgttcatcgccgaggacggccatgtcctgatcgcggccgac
tattcgcagatcgagttgcggctggccgcgcatatggccgacgtgcccgccctgcgcgat
gcctttgccaatggcgacgacatccacagcctgaccgcgatggagctgttcggcgaggtc
aatcgcgacacgcgcgggcgcgccaagacgatcaacttcgccatcctctacggcatttcg
cgctggggcctggcggggcggctcgacgtgtcggcggacgaggcgcagtcgatgatcgac
cgctatttcgaacgtttccccggcatcaaccgctatatcgccgagacgctgtcgagcgtg
cgcgagaaggggttcaccgagacgctgttcggccgcaagacgcatttcccgcgcatcgcc
tcgcgcaaccagggcgaacgccagggggccgagcgtgccgcgatcaacgcgccgatccag
ggcaccagcgccgacatcatcaagcgcgccatggtccgcatggaacccgccctcgccgcc
gctggcctcggccatgtccggatgctgctgcaggtgcatgacgaactggtgttcgaggcg
cccgaagcggatgccgaggcggcgggcgcggtcatccgcgaggtgatggcgggcgcggcc
gaaccggcggtgtcgctgtcggtgccgctgggcgtcgagatcggcttcggcaagagctgg
ggcgcggcacattga
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