Sphingomonas sp. LK11: AV944_03565
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Entry
AV944_03565 CDS
T04954
Name
(GenBank) RNA polymerase subunit sigma-70
KO
K02405
RNA polymerase sigma factor FliA
Organism
splk
Sphingomonas sp. LK11
Pathway
splk02020
Two-component system
splk02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
splk00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
AV944_03565
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
AV944_03565
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
splk03021
]
AV944_03565
09183 Protein families: signaling and cellular processes
02035 Bacterial motility proteins [BR:
splk02035
]
AV944_03565
Transcription machinery [BR:
splk03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
AV944_03565
Bacterial motility proteins [BR:
splk02035
]
Flagellar system
Flagellar assembly proteins
Stator
AV944_03565
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r4
Sigma70_r2
Sigma70_r4_2
Sigma70_r3
Sigma70_ECF
PhyR_sigma2
Motif
Other DBs
NCBI-ProteinID:
APX65073
LinkDB
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Position
complement(751946..752764)
Genome browser
AA seq
272 aa
AA seq
DB search
MSAHPLSGAFMDAQTFNPANFDPALANPTVADQPLTYRPAPRRAGLPGGDANAVIRQHLP
LVRRIAWHVHGSMSSMIEVEDLVQVGLVALVEAAASFEERGVEFGHYLKSRLRGAMIDEL
RRQATTTRGAMRRRRQYHEAVNTLSQTEGQAPADEAVAEKLGITVERLRADYKTAEAVRM
EAIDDVYADDLPWFADDTPDAFEQLAESDLRDALIAAISALPEREAMVIQLYYVEELNLE
EIGQVLGVGAARVCQIKSAAHARLKKALASQR
NT seq
819 nt
NT seq
+upstream
nt +downstream
nt
atgagcgcacatcccctgagcggcgcgttcatggacgcgcagaccttcaacccggcgaat
ttcgatcccgcgctggccaatcccacggtcgccgatcagccgctgacctatcgtcccgcg
ccgcgtcgcgcagggctgcccggcggcgatgcgaatgcggtcatccgccagcatctgccg
ctggtccggcgcatcgcgtggcatgtgcatgggtccatgtcgagcatgatcgaagtcgag
gacctggtgcaggtcggcctggtcgcgctggtcgaggccgccgcctcgttcgaggagcgc
ggcgtcgagttcggccattatctgaagtcgcggctgcgcggcgcgatgatcgacgagctt
cggcgtcaggcgacgacgacgcgcggcgcgatgcgtcgccgtcgccaatatcacgaggcg
gtcaacacgctgtcgcagaccgagggccaggccccggccgacgaggcggtcgccgaaaag
ctgggcatcacggtcgaacggctgcgcgccgactataagaccgccgaggccgttcgcatg
gaagcgatcgacgatgtctatgcggacgacctgccctggttcgccgacgacacgcccgac
gccttcgagcagctggccgaaagcgacctgcgcgacgcgctgatcgccgccatctccgcg
ctccccgagcgcgaggcgatggtgatccagctttattatgtcgaggaactgaacctggag
gaaatcggccaggtgctgggcgtcggcgccgcgcgagtctgccagatcaagagcgcggcg
catgcccgcctgaaaaaggccctcgccagccagcgttaa
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