Sphingomonas sp. LK11: AV944_05395
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Entry
AV944_05395 CDS
T04954
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
splk
Sphingomonas sp. LK11
Pathway
splk03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
splk00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
AV944_05395
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
splk03021
]
AV944_05395
03400 DNA repair and recombination proteins [BR:
splk03400
]
AV944_05395
Enzymes [BR:
splk01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
AV944_05395
Transcription machinery [BR:
splk03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
AV944_05395
DNA repair and recombination proteins [BR:
splk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
AV944_05395
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_A_CTD
RNA_pol_L
DUF211
RNA_pol_L_2
Motif
Other DBs
NCBI-ProteinID:
APX65373
LinkDB
All DBs
Position
1112427..1113491
Genome browser
AA seq
354 aa
AA seq
DB search
MSVNAKNWQELKKPNALEKKGGDGKRKATFVAEPLERGFGLTLGNALRRVLLSSLQGAAV
TSIKIENVLHEFSSLAGVREDVTDIVLNVKQLAIRMQGEGPKRLQLSATGPATVKAGDIA
VSGDIEVMNKDLVICHLDEGATFNMELTADIGKGYVPAASNRPADAPIGLIPVDALYSPV
RQVSYKVDPTRVGQDLDYDKLTLSIETDGTVTPEDAVAYAARILQDQLALFVHFDDSALT
RAAPVGQAAIPAAGGEPQSDAQQINRYLLKKVDELELSVRSANCLKNDNIIYIGDLVGKT
EAEMLRTPNFGRKSLNEIKEVLSSMGLRLGMEIPGWPPENIEEMAKKLEQEIMG
NT seq
1065 nt
NT seq
+upstream
nt +downstream
nt
gtgtctgtcaacgcaaagaactggcaggaactgaagaagcccaacgcgctcgagaaaaag
ggtggcgatggcaagcggaaggcgacgttcgttgccgaaccgctggagcgtggcttcggc
ctgacgctgggcaacgcgcttcgccgcgtgctcctgtcgtcgctccagggcgcggcggtg
acctcgatcaaaatcgagaacgtgctgcacgagttctcgtcgctcgccggtgtgcgtgaa
gacgtcaccgacatcgtgctgaacgtcaagcagctcgcgatccgcatgcagggcgaaggc
cccaagcgtctccagctgtcggcgaccggtcccgccaccgtcaaggccggcgacatcgcc
gtgtcgggcgacatcgaggtcatgaacaaggacctggtgatctgccatctcgacgaaggc
gcgacgttcaacatggaactgaccgccgacatcggtaagggctatgtccccgccgcgtcg
aaccgtccggccgatgcgccgatcggtctgatccccgtcgatgcgctctactcgccggtc
cgtcaggtgtcgtacaaggtcgatccgacccgcgtcggccaagacctggactatgacaag
ctgacgctctcgatcgagaccgatggcaccgtcaccccggaagacgccgtggcctatgcc
gcgcgcatcctccaggaccagctggcgctgttcgtgcacttcgacgactcggcgctcacc
cgcgcggcccccgtgggccaggcggcgatccccgccgctggtggcgagccgcagagcgac
gcgcagcagatcaaccgttaccttctcaagaaggtcgacgagttggaactgtcggtgcgt
tcggcgaactgcctcaagaacgacaacatcatctatatcggcgacctggtcggcaagacc
gaagccgagatgctgcgcaccccgaatttcggccgcaagtcgctgaacgaaatcaaggaa
gtgctgtcgtccatgggtctgcgcctgggcatggaaatccccggctggccgcccgagaat
atcgaggaaatggccaagaagctggaacaggagatcatgggctga
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